Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20724 and SM_b20725 overlap by 4 nucleotides SM_b20725 and SM_b20726 are separated by 119 nucleotides SM_b20726 and SM_b20727 are separated by 74 nucleotides SM_b20727 and SM_b20728 are separated by 82 nucleotides SM_b20728 and SM_b20729 are separated by 108 nucleotides
SM_b20724: SM_b20724 - hypothetical protein, at 1,529,225 to 1,530,169
_b20724
SM_b20725: SM_b20725 - hypothetical protein, at 1,530,166 to 1,530,657
_b20725
SM_b20726: SM_b20726 - hypothetical protein, at 1,530,777 to 1,532,294
_b20726
SM_b20727: SM_b20727 - hypothetical protein, at 1,532,369 to 1,532,602
_b20727
SM_b20728: SM_b20728 - hypothetical protein, at 1,532,685 to 1,532,894
_b20728
SM_b20729: SM_b20729 - hypothetical protein, at 1,533,003 to 1,533,416
_b20729
Position (kb)
1530
1531
1532
1533 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1530.080 kb on + strand at 1530.328 kb on + strand, within SM_b20725 at 1530.546 kb on - strand, within SM_b20725 at 1530.706 kb on + strand at 1530.707 kb on - strand at 1530.711 kb on + strand at 1530.712 kb on - strand at 1530.712 kb on - strand at 1530.738 kb on - strand at 1530.749 kb on - strand at 1530.761 kb on + strand at 1530.762 kb on - strand at 1530.782 kb on + strand at 1530.783 kb on - strand at 1530.841 kb on - strand at 1530.933 kb on + strand, within SM_b20726 at 1530.934 kb on - strand, within SM_b20726 at 1530.934 kb on - strand, within SM_b20726 at 1530.934 kb on - strand, within SM_b20726 at 1530.978 kb on + strand, within SM_b20726 at 1530.978 kb on + strand, within SM_b20726 at 1530.979 kb on - strand, within SM_b20726 at 1530.979 kb on - strand, within SM_b20726 at 1530.979 kb on - strand, within SM_b20726 at 1530.993 kb on + strand, within SM_b20726 at 1530.993 kb on + strand, within SM_b20726 at 1530.994 kb on - strand, within SM_b20726 at 1530.994 kb on - strand, within SM_b20726 at 1531.176 kb on + strand, within SM_b20726 at 1531.176 kb on + strand, within SM_b20726 at 1531.614 kb on + strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.615 kb on - strand, within SM_b20726 at 1531.794 kb on + strand, within SM_b20726 at 1531.928 kb on - strand, within SM_b20726 at 1532.820 kb on - strand, within SM_b20728 at 1532.820 kb on - strand, within SM_b20728 at 1532.820 kb on - strand, within SM_b20728 at 1533.042 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,530,080 + -0.3 1,530,328 + SM_b20725 0.33 -0.2 1,530,546 - SM_b20725 0.77 +0.9 1,530,706 + +0.2 1,530,707 - +0.4 1,530,711 + -0.4 1,530,712 - -0.2 1,530,712 - -0.2 1,530,738 - +0.1 1,530,749 - -0.3 1,530,761 + -0.4 1,530,762 - +1.0 1,530,782 + +0.3 1,530,783 - -1.0 1,530,841 - -0.6 1,530,933 + SM_b20726 0.10 +0.3 1,530,934 - SM_b20726 0.10 -0.8 1,530,934 - SM_b20726 0.10 -0.5 1,530,934 - SM_b20726 0.10 -0.3 1,530,978 + SM_b20726 0.13 -0.6 1,530,978 + SM_b20726 0.13 -0.3 1,530,979 - SM_b20726 0.13 +0.5 1,530,979 - SM_b20726 0.13 +0.6 1,530,979 - SM_b20726 0.13 +0.2 1,530,993 + SM_b20726 0.14 +0.1 1,530,993 + SM_b20726 0.14 +0.9 1,530,994 - SM_b20726 0.14 -0.3 1,530,994 - SM_b20726 0.14 -0.3 1,531,176 + SM_b20726 0.26 -0.3 1,531,176 + SM_b20726 0.26 +0.3 1,531,614 + SM_b20726 0.55 +0.9 1,531,615 - SM_b20726 0.55 +2.2 1,531,615 - SM_b20726 0.55 +0.4 1,531,615 - SM_b20726 0.55 +0.6 1,531,615 - SM_b20726 0.55 +0.6 1,531,615 - SM_b20726 0.55 +0.5 1,531,615 - SM_b20726 0.55 +0.8 1,531,615 - SM_b20726 0.55 -0.0 1,531,794 + SM_b20726 0.67 -0.3 1,531,928 - SM_b20726 0.76 +0.0 1,532,820 - SM_b20728 0.64 -2.0 1,532,820 - SM_b20728 0.64 -0.2 1,532,820 - SM_b20728 0.64 +0.6 1,533,042 + -0.1
Or see this region's nucleotide sequence