Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20683 and SM_b20684 are separated by 134 nucleotides SM_b20684 and SM_b20685 are separated by 37 nucleotides
SM_b20683: SM_b20683 - LysR family transcriptional regulator, at 1,485,370 to 1,486,269
_b20683
SM_b20684: SM_b20684 - hypothetical protein, at 1,486,404 to 1,487,240
_b20684
SM_b20685: SM_b20685 - hypothetical protein, at 1,487,278 to 1,489,734
_b20685
Position (kb)
1486
1487
1488 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1485.467 kb on + strand, within SM_b20683 at 1485.468 kb on - strand, within SM_b20683 at 1485.468 kb on - strand, within SM_b20683 at 1485.594 kb on - strand, within SM_b20683 at 1485.618 kb on + strand, within SM_b20683 at 1485.619 kb on - strand, within SM_b20683 at 1485.622 kb on - strand, within SM_b20683 at 1485.625 kb on + strand, within SM_b20683 at 1485.626 kb on - strand, within SM_b20683 at 1485.659 kb on + strand, within SM_b20683 at 1485.985 kb on + strand, within SM_b20683 at 1485.986 kb on - strand, within SM_b20683 at 1485.986 kb on - strand, within SM_b20683 at 1486.001 kb on - strand, within SM_b20683 at 1486.248 kb on - strand at 1486.261 kb on + strand at 1486.262 kb on - strand at 1486.262 kb on - strand at 1486.317 kb on - strand at 1486.416 kb on + strand at 1486.416 kb on + strand at 1486.420 kb on - strand at 1486.488 kb on + strand, within SM_b20684 at 1486.533 kb on + strand, within SM_b20684 at 1486.534 kb on - strand, within SM_b20684 at 1486.534 kb on - strand, within SM_b20684 at 1486.553 kb on + strand, within SM_b20684 at 1486.553 kb on + strand, within SM_b20684 at 1486.553 kb on + strand, within SM_b20684 at 1486.611 kb on + strand, within SM_b20684 at 1486.611 kb on + strand, within SM_b20684 at 1486.611 kb on + strand, within SM_b20684 at 1486.612 kb on - strand, within SM_b20684 at 1486.612 kb on - strand, within SM_b20684 at 1486.613 kb on + strand, within SM_b20684 at 1486.613 kb on + strand, within SM_b20684 at 1486.613 kb on + strand, within SM_b20684 at 1486.613 kb on + strand, within SM_b20684 at 1486.613 kb on + strand, within SM_b20684 at 1486.613 kb on + strand, within SM_b20684 at 1486.613 kb on + strand, within SM_b20684 at 1486.613 kb on + strand, within SM_b20684 at 1486.614 kb on - strand, within SM_b20684 at 1486.614 kb on - strand, within SM_b20684 at 1486.833 kb on + strand, within SM_b20684 at 1487.049 kb on + strand, within SM_b20684 at 1487.049 kb on + strand, within SM_b20684 at 1487.049 kb on + strand, within SM_b20684 at 1487.049 kb on + strand, within SM_b20684 at 1487.050 kb on - strand, within SM_b20684 at 1487.115 kb on + strand, within SM_b20684 at 1487.115 kb on + strand, within SM_b20684 at 1487.115 kb on + strand, within SM_b20684 at 1487.116 kb on - strand, within SM_b20684 at 1487.116 kb on - strand, within SM_b20684 at 1487.116 kb on - strand, within SM_b20684 at 1487.116 kb on - strand, within SM_b20684 at 1487.117 kb on + strand, within SM_b20684 at 1487.117 kb on + strand, within SM_b20684 at 1487.117 kb on + strand, within SM_b20684 at 1487.117 kb on + strand, within SM_b20684 at 1487.117 kb on + strand, within SM_b20684 at 1487.117 kb on + strand, within SM_b20684 at 1487.117 kb on + strand, within SM_b20684 at 1487.117 kb on + strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.118 kb on - strand, within SM_b20684 at 1487.151 kb on + strand, within SM_b20684 at 1487.152 kb on - strand, within SM_b20684 at 1487.152 kb on - strand, within SM_b20684 at 1487.179 kb on - strand at 1487.187 kb on + strand at 1487.187 kb on + strand at 1487.188 kb on - strand at 1487.207 kb on + strand at 1487.302 kb on + strand at 1487.524 kb on + strand, within SM_b20685 at 1487.524 kb on + strand, within SM_b20685 at 1487.525 kb on - strand, within SM_b20685 at 1487.525 kb on - strand, within SM_b20685 at 1487.526 kb on + strand, within SM_b20685 at 1487.527 kb on - strand, within SM_b20685 at 1487.560 kb on + strand, within SM_b20685 at 1488.022 kb on + strand, within SM_b20685 at 1488.098 kb on - strand, within SM_b20685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,485,467 + SM_b20683 0.11 +0.7 1,485,468 - SM_b20683 0.11 -1.3 1,485,468 - SM_b20683 0.11 +0.2 1,485,594 - SM_b20683 0.25 +0.0 1,485,618 + SM_b20683 0.28 +1.4 1,485,619 - SM_b20683 0.28 +0.2 1,485,622 - SM_b20683 0.28 -0.7 1,485,625 + SM_b20683 0.28 -0.1 1,485,626 - SM_b20683 0.28 -0.1 1,485,659 + SM_b20683 0.32 -0.8 1,485,985 + SM_b20683 0.68 +0.2 1,485,986 - SM_b20683 0.68 -0.1 1,485,986 - SM_b20683 0.68 -0.7 1,486,001 - SM_b20683 0.70 +0.6 1,486,248 - -1.0 1,486,261 + -0.1 1,486,262 - -0.7 1,486,262 - -1.1 1,486,317 - +0.9 1,486,416 + +1.9 1,486,416 + +3.2 1,486,420 - +1.2 1,486,488 + SM_b20684 0.10 +2.0 1,486,533 + SM_b20684 0.15 +1.8 1,486,534 - SM_b20684 0.16 +1.5 1,486,534 - SM_b20684 0.16 +1.7 1,486,553 + SM_b20684 0.18 +2.1 1,486,553 + SM_b20684 0.18 +2.1 1,486,553 + SM_b20684 0.18 +1.7 1,486,611 + SM_b20684 0.25 +1.5 1,486,611 + SM_b20684 0.25 -0.1 1,486,611 + SM_b20684 0.25 +2.0 1,486,612 - SM_b20684 0.25 +2.6 1,486,612 - SM_b20684 0.25 +2.5 1,486,613 + SM_b20684 0.25 +0.5 1,486,613 + SM_b20684 0.25 +1.4 1,486,613 + SM_b20684 0.25 +2.1 1,486,613 + SM_b20684 0.25 +1.7 1,486,613 + SM_b20684 0.25 +2.2 1,486,613 + SM_b20684 0.25 +1.6 1,486,613 + SM_b20684 0.25 +1.6 1,486,613 + SM_b20684 0.25 +2.1 1,486,614 - SM_b20684 0.25 +2.5 1,486,614 - SM_b20684 0.25 +2.4 1,486,833 + SM_b20684 0.51 +1.8 1,487,049 + SM_b20684 0.77 +0.8 1,487,049 + SM_b20684 0.77 +2.1 1,487,049 + SM_b20684 0.77 +2.5 1,487,049 + SM_b20684 0.77 +1.2 1,487,050 - SM_b20684 0.77 +2.5 1,487,115 + SM_b20684 0.85 +1.9 1,487,115 + SM_b20684 0.85 +1.8 1,487,115 + SM_b20684 0.85 +2.7 1,487,116 - SM_b20684 0.85 +2.1 1,487,116 - SM_b20684 0.85 +2.1 1,487,116 - SM_b20684 0.85 +2.5 1,487,116 - SM_b20684 0.85 +2.4 1,487,117 + SM_b20684 0.85 +1.8 1,487,117 + SM_b20684 0.85 +1.9 1,487,117 + SM_b20684 0.85 +2.2 1,487,117 + SM_b20684 0.85 +1.3 1,487,117 + SM_b20684 0.85 +0.2 1,487,117 + SM_b20684 0.85 +2.2 1,487,117 + SM_b20684 0.85 +1.9 1,487,117 + SM_b20684 0.85 +1.7 1,487,118 - SM_b20684 0.85 +2.3 1,487,118 - SM_b20684 0.85 +2.0 1,487,118 - SM_b20684 0.85 +1.3 1,487,118 - SM_b20684 0.85 +3.0 1,487,118 - SM_b20684 0.85 +3.2 1,487,118 - SM_b20684 0.85 +2.5 1,487,118 - SM_b20684 0.85 +2.6 1,487,118 - SM_b20684 0.85 +2.3 1,487,118 - SM_b20684 0.85 +2.2 1,487,118 - SM_b20684 0.85 +1.8 1,487,118 - SM_b20684 0.85 +3.4 1,487,151 + SM_b20684 0.89 +1.4 1,487,152 - SM_b20684 0.89 +2.4 1,487,152 - SM_b20684 0.89 +2.5 1,487,179 - +1.7 1,487,187 + +2.2 1,487,187 + +1.6 1,487,188 - +2.0 1,487,207 + +1.7 1,487,302 + +0.1 1,487,524 + SM_b20685 0.10 -0.0 1,487,524 + SM_b20685 0.10 +0.2 1,487,525 - SM_b20685 0.10 -1.9 1,487,525 - SM_b20685 0.10 -0.6 1,487,526 + SM_b20685 0.10 -1.1 1,487,527 - SM_b20685 0.10 +0.7 1,487,560 + SM_b20685 0.11 -0.3 1,488,022 + SM_b20685 0.30 -0.3 1,488,098 - SM_b20685 0.33 -0.8
Or see this region's nucleotide sequence