Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20676 and SM_b20677 are separated by 98 nucleotides SM_b20677 and SM_b20678 are separated by 47 nucleotides SM_b20678 and SM_b20679 are separated by 114 nucleotides
SM_b20676: SM_b20676 - hypothetical protein, at 1,477,767 to 1,478,687
_b20676
SM_b20677: SM_b20677 - ureidoglycolate hydrolase, at 1,478,786 to 1,479,277
_b20677
SM_b20678: SM_b20678 - hydroxypyruvate reductase, at 1,479,325 to 1,480,593
_b20678
SM_b20679: SM_b20679 - tartronate semialdehyde reductase, at 1,480,708 to 1,481,592
_b20679
Position (kb)
1479
1480
1481 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1478.339 kb on + strand, within SM_b20676 at 1478.744 kb on - strand at 1478.793 kb on + strand at 1478.794 kb on - strand at 1478.794 kb on - strand at 1478.806 kb on - strand at 1478.806 kb on - strand at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.836 kb on + strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1478.837 kb on - strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.087 kb on + strand, within SM_b20677 at 1479.088 kb on - strand, within SM_b20677 at 1479.272 kb on + strand at 1479.273 kb on - strand at 1479.273 kb on - strand at 1479.480 kb on + strand, within SM_b20678 at 1479.568 kb on + strand, within SM_b20678 at 1480.118 kb on - strand, within SM_b20678 at 1480.354 kb on - strand, within SM_b20678 at 1480.501 kb on - strand at 1480.710 kb on - strand at 1481.081 kb on + strand, within SM_b20679 at 1481.245 kb on - strand, within SM_b20679 at 1481.246 kb on + strand, within SM_b20679 at 1481.247 kb on - strand, within SM_b20679 at 1481.345 kb on + strand, within SM_b20679 at 1481.345 kb on + strand, within SM_b20679 at 1481.346 kb on - strand, within SM_b20679 at 1481.349 kb on - strand, within SM_b20679 at 1481.391 kb on + strand, within SM_b20679 at 1481.583 kb on + strand at 1481.583 kb on + strand at 1481.583 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,478,339 + SM_b20676 0.62 -2.1 1,478,744 - +0.0 1,478,793 + +0.5 1,478,794 - -0.5 1,478,794 - +0.0 1,478,806 - +0.0 1,478,806 - +0.2 1,478,836 + SM_b20677 0.10 -0.4 1,478,836 + SM_b20677 0.10 -0.7 1,478,836 + SM_b20677 0.10 -0.4 1,478,836 + SM_b20677 0.10 -0.9 1,478,837 - SM_b20677 0.10 -0.5 1,478,837 - SM_b20677 0.10 -1.0 1,479,087 + SM_b20677 0.61 -0.5 1,479,087 + SM_b20677 0.61 -0.8 1,479,088 - SM_b20677 0.61 +0.5 1,479,272 + -1.9 1,479,273 - -0.1 1,479,273 - +0.1 1,479,480 + SM_b20678 0.12 -0.1 1,479,568 + SM_b20678 0.19 +0.3 1,480,118 - SM_b20678 0.62 -0.1 1,480,354 - SM_b20678 0.81 +1.8 1,480,501 - -0.2 1,480,710 - -0.2 1,481,081 + SM_b20679 0.42 +0.1 1,481,245 - SM_b20679 0.61 -0.0 1,481,246 + SM_b20679 0.61 -1.2 1,481,247 - SM_b20679 0.61 -0.2 1,481,345 + SM_b20679 0.72 +0.1 1,481,345 + SM_b20679 0.72 -0.3 1,481,346 - SM_b20679 0.72 +3.4 1,481,349 - SM_b20679 0.72 -0.4 1,481,391 + SM_b20679 0.77 +0.5 1,481,583 + +0.8 1,481,583 + -1.1 1,481,583 + -0.1
Or see this region's nucleotide sequence