Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20650 and SM_b20651 are separated by 27 nucleotides SM_b20651 and SM_b20652 are separated by 26 nucleotides SM_b20652 and SM_b20654 are separated by 596 nucleotides
SM_b20650: SM_b20650 - long-chain fatty acid CoA ligase, at 1,451,583 to 1,453,130
_b20650
SM_b20651: SM_b20651 - hypothetical protein, at 1,453,158 to 1,453,424
_b20651
SM_b20652: SM_b20652 - asparagine synthetase, at 1,453,451 to 1,455,388
_b20652
SM_b20654: SM_b20654 - hypothetical protein, at 1,455,985 to 1,456,380
_b20654
Position (kb)
1453
1454
1455
1456 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1452.478 kb on + strand, within SM_b20650 at 1452.479 kb on - strand, within SM_b20650 at 1452.479 kb on - strand, within SM_b20650 at 1452.544 kb on + strand, within SM_b20650 at 1452.545 kb on - strand, within SM_b20650 at 1452.545 kb on - strand, within SM_b20650 at 1452.545 kb on - strand, within SM_b20650 at 1452.576 kb on - strand, within SM_b20650 at 1452.626 kb on + strand, within SM_b20650 at 1452.628 kb on + strand, within SM_b20650 at 1452.628 kb on + strand, within SM_b20650 at 1452.628 kb on + strand, within SM_b20650 at 1452.628 kb on + strand, within SM_b20650 at 1452.629 kb on - strand, within SM_b20650 at 1452.629 kb on - strand, within SM_b20650 at 1452.629 kb on - strand, within SM_b20650 at 1452.629 kb on - strand, within SM_b20650 at 1452.856 kb on + strand, within SM_b20650 at 1452.856 kb on + strand, within SM_b20650 at 1452.856 kb on + strand, within SM_b20650 at 1452.857 kb on - strand, within SM_b20650 at 1452.857 kb on - strand, within SM_b20650 at 1452.857 kb on - strand, within SM_b20650 at 1452.857 kb on - strand, within SM_b20650 at 1453.160 kb on - strand at 1453.160 kb on - strand at 1453.355 kb on - strand, within SM_b20651 at 1453.355 kb on - strand, within SM_b20651 at 1453.409 kb on + strand at 1453.425 kb on + strand at 1453.654 kb on - strand, within SM_b20652 at 1453.903 kb on + strand, within SM_b20652 at 1453.903 kb on + strand, within SM_b20652 at 1453.904 kb on - strand, within SM_b20652 at 1453.904 kb on - strand, within SM_b20652 at 1453.904 kb on - strand, within SM_b20652 at 1453.904 kb on - strand, within SM_b20652 at 1453.905 kb on + strand, within SM_b20652 at 1453.905 kb on + strand, within SM_b20652 at 1453.935 kb on + strand, within SM_b20652 at 1454.011 kb on - strand, within SM_b20652 at 1454.175 kb on + strand, within SM_b20652 at 1454.175 kb on + strand, within SM_b20652 at 1454.263 kb on + strand, within SM_b20652 at 1454.263 kb on + strand, within SM_b20652 at 1454.279 kb on + strand, within SM_b20652 at 1454.349 kb on + strand, within SM_b20652 at 1454.605 kb on - strand, within SM_b20652 at 1454.605 kb on - strand, within SM_b20652 at 1454.697 kb on + strand, within SM_b20652 at 1454.697 kb on + strand, within SM_b20652 at 1454.697 kb on + strand, within SM_b20652 at 1454.697 kb on + strand, within SM_b20652 at 1454.697 kb on + strand, within SM_b20652 at 1454.739 kb on + strand, within SM_b20652 at 1454.840 kb on + strand, within SM_b20652 at 1454.841 kb on - strand, within SM_b20652 at 1454.849 kb on + strand, within SM_b20652 at 1454.849 kb on + strand, within SM_b20652 at 1454.849 kb on + strand, within SM_b20652 at 1454.849 kb on + strand, within SM_b20652 at 1454.849 kb on + strand, within SM_b20652 at 1454.850 kb on - strand, within SM_b20652 at 1455.098 kb on - strand, within SM_b20652 at 1455.156 kb on + strand, within SM_b20652 at 1455.157 kb on - strand, within SM_b20652 at 1455.157 kb on - strand, within SM_b20652 at 1455.157 kb on - strand, within SM_b20652 at 1455.346 kb on + strand at 1455.347 kb on - strand at 1455.480 kb on + strand at 1455.675 kb on - strand at 1455.747 kb on + strand at 1455.747 kb on + strand at 1455.747 kb on + strand at 1455.748 kb on - strand at 1455.748 kb on - strand at 1455.792 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.861 kb on + strand at 1455.862 kb on - strand at 1455.862 kb on - strand at 1455.862 kb on - strand at 1455.862 kb on - strand at 1455.904 kb on + strand at 1455.904 kb on + strand at 1455.985 kb on - strand at 1456.007 kb on + strand at 1456.048 kb on - strand, within SM_b20654 at 1456.048 kb on - strand, within SM_b20654 at 1456.094 kb on + strand at 1456.095 kb on - strand, within SM_b20654 at 1456.125 kb on + strand, within SM_b20654 at 1456.125 kb on + strand, within SM_b20654 at 1456.125 kb on + strand, within SM_b20654 at 1456.232 kb on + strand, within SM_b20654 at 1456.233 kb on - strand, within SM_b20654 at 1456.330 kb on - strand, within SM_b20654 at 1456.371 kb on + strand at 1456.372 kb on - strand at 1456.378 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,452,478 + SM_b20650 0.58 -0.3 1,452,479 - SM_b20650 0.58 +0.2 1,452,479 - SM_b20650 0.58 +0.1 1,452,544 + SM_b20650 0.62 -0.5 1,452,545 - SM_b20650 0.62 +0.7 1,452,545 - SM_b20650 0.62 +3.5 1,452,545 - SM_b20650 0.62 -0.1 1,452,576 - SM_b20650 0.64 +0.5 1,452,626 + SM_b20650 0.67 -0.9 1,452,628 + SM_b20650 0.68 -0.1 1,452,628 + SM_b20650 0.68 +0.4 1,452,628 + SM_b20650 0.68 -0.8 1,452,628 + SM_b20650 0.68 +0.1 1,452,629 - SM_b20650 0.68 +0.0 1,452,629 - SM_b20650 0.68 +1.1 1,452,629 - SM_b20650 0.68 -0.6 1,452,629 - SM_b20650 0.68 +1.0 1,452,856 + SM_b20650 0.82 +1.6 1,452,856 + SM_b20650 0.82 -0.1 1,452,856 + SM_b20650 0.82 +1.3 1,452,857 - SM_b20650 0.82 -0.9 1,452,857 - SM_b20650 0.82 -0.4 1,452,857 - SM_b20650 0.82 +0.5 1,452,857 - SM_b20650 0.82 +0.5 1,453,160 - -0.1 1,453,160 - +0.2 1,453,355 - SM_b20651 0.74 +0.8 1,453,355 - SM_b20651 0.74 +0.8 1,453,409 + -0.3 1,453,425 + -0.9 1,453,654 - SM_b20652 0.10 +0.1 1,453,903 + SM_b20652 0.23 -0.5 1,453,903 + SM_b20652 0.23 +0.8 1,453,904 - SM_b20652 0.23 -0.0 1,453,904 - SM_b20652 0.23 -0.3 1,453,904 - SM_b20652 0.23 +0.4 1,453,904 - SM_b20652 0.23 -0.1 1,453,905 + SM_b20652 0.23 +0.2 1,453,905 + SM_b20652 0.23 -1.0 1,453,935 + SM_b20652 0.25 -0.1 1,454,011 - SM_b20652 0.29 +0.5 1,454,175 + SM_b20652 0.37 +1.4 1,454,175 + SM_b20652 0.37 -0.0 1,454,263 + SM_b20652 0.42 +0.3 1,454,263 + SM_b20652 0.42 +1.8 1,454,279 + SM_b20652 0.43 -0.7 1,454,349 + SM_b20652 0.46 -0.4 1,454,605 - SM_b20652 0.60 +0.3 1,454,605 - SM_b20652 0.60 +0.4 1,454,697 + SM_b20652 0.64 +1.7 1,454,697 + SM_b20652 0.64 +1.0 1,454,697 + SM_b20652 0.64 +0.2 1,454,697 + SM_b20652 0.64 +0.4 1,454,697 + SM_b20652 0.64 +0.2 1,454,739 + SM_b20652 0.66 +0.6 1,454,840 + SM_b20652 0.72 +0.3 1,454,841 - SM_b20652 0.72 +0.4 1,454,849 + SM_b20652 0.72 +0.7 1,454,849 + SM_b20652 0.72 +0.3 1,454,849 + SM_b20652 0.72 +0.6 1,454,849 + SM_b20652 0.72 +0.2 1,454,849 + SM_b20652 0.72 -0.3 1,454,850 - SM_b20652 0.72 +0.3 1,455,098 - SM_b20652 0.85 -0.1 1,455,156 + SM_b20652 0.88 -2.5 1,455,157 - SM_b20652 0.88 +0.0 1,455,157 - SM_b20652 0.88 -0.1 1,455,157 - SM_b20652 0.88 +0.9 1,455,346 + -0.6 1,455,347 - -0.3 1,455,480 + +1.0 1,455,675 - +1.0 1,455,747 + +0.3 1,455,747 + +1.2 1,455,747 + +0.6 1,455,748 - +1.9 1,455,748 - -0.1 1,455,792 + +0.6 1,455,861 + -0.6 1,455,861 + -0.6 1,455,861 + -2.1 1,455,861 + +0.6 1,455,861 + -0.4 1,455,861 + -0.2 1,455,862 - +1.2 1,455,862 - +2.2 1,455,862 - +0.9 1,455,862 - -0.3 1,455,904 + -1.0 1,455,904 + -0.2 1,455,985 - -0.0 1,456,007 + -0.3 1,456,048 - SM_b20654 0.16 -0.1 1,456,048 - SM_b20654 0.16 -1.7 1,456,094 + +1.2 1,456,095 - SM_b20654 0.28 -1.3 1,456,125 + SM_b20654 0.35 +1.2 1,456,125 + SM_b20654 0.35 -2.0 1,456,125 + SM_b20654 0.35 +0.1 1,456,232 + SM_b20654 0.62 -0.6 1,456,233 - SM_b20654 0.63 -0.0 1,456,330 - SM_b20654 0.87 +0.2 1,456,371 + -1.3 1,456,372 - -0.1 1,456,378 + -0.1
Or see this region's nucleotide sequence