Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20616 and SM_b20617 are separated by 196 nucleotides SM_b20617 and SM_b20618 overlap by 4 nucleotides SM_b20618 and SM_b20619 are separated by 69 nucleotides
SM_b20616: SM_b20616 - thiamine biosynthesis oxidoreductase, at 1,635,781 to 1,636,758
_b20616
SM_b20617: SM_b20617 - thiazole synthase, at 1,636,955 to 1,637,728
_b20617
SM_b20618: SM_b20618 - thiamine-phosphate pyrophosphorylase, at 1,637,725 to 1,638,330
_b20618
SM_b20619: SM_b20619 - regulatory protein, at 1,638,400 to 1,639,389
_b20619
Position (kb)
1637
1638
1639 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1636.749 kb on + strand at 1636.919 kb on + strand at 1636.967 kb on + strand at 1636.967 kb on + strand at 1637.743 kb on + strand at 1637.852 kb on + strand, within SM_b20618 at 1637.853 kb on - strand, within SM_b20618 at 1637.924 kb on + strand, within SM_b20618 at 1638.092 kb on - strand, within SM_b20618 at 1638.202 kb on - strand, within SM_b20618 at 1638.328 kb on + strand at 1638.485 kb on - strand at 1638.485 kb on - strand at 1638.487 kb on + strand at 1638.488 kb on - strand at 1638.488 kb on - strand at 1638.488 kb on - strand at 1638.489 kb on + strand at 1638.489 kb on + strand at 1638.490 kb on - strand at 1638.490 kb on - strand at 1638.490 kb on - strand at 1638.557 kb on - strand, within SM_b20619 at 1638.557 kb on - strand, within SM_b20619 at 1638.557 kb on - strand, within SM_b20619 at 1638.557 kb on - strand, within SM_b20619 at 1638.557 kb on - strand, within SM_b20619 at 1638.557 kb on - strand, within SM_b20619 at 1638.584 kb on + strand, within SM_b20619 at 1638.699 kb on - strand, within SM_b20619 at 1638.794 kb on + strand, within SM_b20619 at 1638.794 kb on + strand, within SM_b20619 at 1638.794 kb on + strand, within SM_b20619 at 1638.795 kb on - strand, within SM_b20619 at 1638.795 kb on - strand, within SM_b20619 at 1638.795 kb on - strand, within SM_b20619 at 1638.797 kb on - strand, within SM_b20619 at 1638.804 kb on - strand, within SM_b20619 at 1638.877 kb on + strand, within SM_b20619 at 1638.878 kb on - strand, within SM_b20619 at 1638.883 kb on + strand, within SM_b20619 at 1639.051 kb on + strand, within SM_b20619 at 1639.051 kb on + strand, within SM_b20619 at 1639.052 kb on - strand, within SM_b20619
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,636,749 + -0.1 1,636,919 + +0.9 1,636,967 + +0.5 1,636,967 + -0.6 1,637,743 + +0.1 1,637,852 + SM_b20618 0.21 +1.0 1,637,853 - SM_b20618 0.21 -0.1 1,637,924 + SM_b20618 0.33 +1.1 1,638,092 - SM_b20618 0.61 +0.6 1,638,202 - SM_b20618 0.79 +0.2 1,638,328 + +0.4 1,638,485 - +0.0 1,638,485 - +1.3 1,638,487 + +0.3 1,638,488 - -0.3 1,638,488 - -0.6 1,638,488 - +0.2 1,638,489 + -0.4 1,638,489 + -0.0 1,638,490 - -1.0 1,638,490 - -0.9 1,638,490 - +0.5 1,638,557 - SM_b20619 0.16 -0.0 1,638,557 - SM_b20619 0.16 -0.2 1,638,557 - SM_b20619 0.16 +0.1 1,638,557 - SM_b20619 0.16 +0.5 1,638,557 - SM_b20619 0.16 -0.2 1,638,557 - SM_b20619 0.16 -2.3 1,638,584 + SM_b20619 0.19 +0.3 1,638,699 - SM_b20619 0.30 +0.9 1,638,794 + SM_b20619 0.40 -0.0 1,638,794 + SM_b20619 0.40 -0.1 1,638,794 + SM_b20619 0.40 +1.2 1,638,795 - SM_b20619 0.40 +0.5 1,638,795 - SM_b20619 0.40 -0.3 1,638,795 - SM_b20619 0.40 +0.5 1,638,797 - SM_b20619 0.40 +0.6 1,638,804 - SM_b20619 0.41 +0.9 1,638,877 + SM_b20619 0.48 -0.4 1,638,878 - SM_b20619 0.48 +3.8 1,638,883 + SM_b20619 0.49 -0.3 1,639,051 + SM_b20619 0.66 +0.2 1,639,051 + SM_b20619 0.66 +0.6 1,639,052 - SM_b20619 0.66 -0.1
Or see this region's nucleotide sequence