Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20603 and SM_b20604 overlap by 4 nucleotides SM_b20604 and SM_b20605 are separated by 142 nucleotides
SM_b20603: SM_b20603 - branched-chain amino acid ABC transporter permease, at 1,616,147 to 1,617,322
_b20603
SM_b20604: SM_b20604 - branched-chain amino acid ABC transporter permease, at 1,617,319 to 1,618,932
_b20604
SM_b20605: SM_b20605 - branched-chain amino acid ABC transporter substrate-binding protein, at 1,619,075 to 1,620,367
_b20605
Position (kb)
1617
1618
1619 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.496 kb on + strand, within SM_b20603 at 1616.497 kb on - strand, within SM_b20603 at 1616.811 kb on + strand, within SM_b20603 at 1616.811 kb on + strand, within SM_b20603 at 1616.812 kb on - strand, within SM_b20603 at 1616.841 kb on + strand, within SM_b20603 at 1616.841 kb on + strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1617.016 kb on - strand, within SM_b20603 at 1617.048 kb on + strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.153 kb on + strand, within SM_b20603 at 1617.153 kb on + strand, within SM_b20603 at 1617.154 kb on - strand, within SM_b20603 at 1617.154 kb on - strand, within SM_b20603 at 1617.162 kb on + strand, within SM_b20603 at 1617.163 kb on - strand, within SM_b20603 at 1617.186 kb on + strand, within SM_b20603 at 1617.187 kb on - strand, within SM_b20603 at 1617.532 kb on + strand, within SM_b20604 at 1617.533 kb on - strand, within SM_b20604 at 1617.533 kb on - strand, within SM_b20604 at 1617.536 kb on + strand, within SM_b20604 at 1617.537 kb on - strand, within SM_b20604 at 1617.895 kb on + strand, within SM_b20604 at 1617.895 kb on + strand, within SM_b20604 at 1617.985 kb on - strand, within SM_b20604 at 1617.985 kb on - strand, within SM_b20604 at 1618.077 kb on + strand, within SM_b20604 at 1618.077 kb on + strand, within SM_b20604 at 1618.079 kb on + strand, within SM_b20604 at 1618.079 kb on + strand, within SM_b20604 at 1618.080 kb on - strand, within SM_b20604 at 1618.194 kb on - strand, within SM_b20604 at 1618.194 kb on - strand, within SM_b20604 at 1618.197 kb on + strand, within SM_b20604 at 1618.198 kb on + strand, within SM_b20604 at 1618.198 kb on + strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.199 kb on - strand, within SM_b20604 at 1618.722 kb on - strand, within SM_b20604 at 1619.175 kb on + strand at 1619.175 kb on + strand at 1619.175 kb on + strand at 1619.176 kb on - strand at 1619.301 kb on + strand, within SM_b20605 at 1619.412 kb on + strand, within SM_b20605 at 1619.412 kb on + strand, within SM_b20605 at 1619.412 kb on + strand, within SM_b20605 at 1619.413 kb on - strand, within SM_b20605 at 1619.413 kb on - strand, within SM_b20605 at 1619.458 kb on + strand, within SM_b20605 at 1619.458 kb on + strand, within SM_b20605 at 1619.459 kb on - strand, within SM_b20605 at 1619.460 kb on + strand, within SM_b20605 at 1619.517 kb on + strand, within SM_b20605 at 1619.799 kb on + strand, within SM_b20605 at 1619.808 kb on + strand, within SM_b20605 at 1619.809 kb on - strand, within SM_b20605 at 1619.809 kb on - strand, within SM_b20605 at 1619.842 kb on - strand, within SM_b20605 at 1619.847 kb on + strand, within SM_b20605 at 1619.848 kb on - strand, within SM_b20605
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,616,351 + SM_b20603 0.17 +0.4 1,616,351 + SM_b20603 0.17 -0.1 1,616,351 + SM_b20603 0.17 +0.6 1,616,352 - SM_b20603 0.17 -0.9 1,616,352 - SM_b20603 0.17 +0.6 1,616,429 + SM_b20603 0.24 +1.6 1,616,429 + SM_b20603 0.24 +0.1 1,616,429 + SM_b20603 0.24 -1.2 1,616,430 - SM_b20603 0.24 +1.3 1,616,430 - SM_b20603 0.24 -1.4 1,616,430 - SM_b20603 0.24 -0.6 1,616,430 - SM_b20603 0.24 -0.5 1,616,496 + SM_b20603 0.30 -0.7 1,616,497 - SM_b20603 0.30 -0.4 1,616,811 + SM_b20603 0.56 -0.4 1,616,811 + SM_b20603 0.56 -0.0 1,616,812 - SM_b20603 0.57 +0.9 1,616,841 + SM_b20603 0.59 -0.0 1,616,841 + SM_b20603 0.59 -0.6 1,616,842 - SM_b20603 0.59 +1.2 1,616,842 - SM_b20603 0.59 +0.5 1,616,842 - SM_b20603 0.59 -0.1 1,617,016 - SM_b20603 0.74 +0.3 1,617,048 + SM_b20603 0.77 +0.0 1,617,049 - SM_b20603 0.77 +0.6 1,617,049 - SM_b20603 0.77 -1.2 1,617,049 - SM_b20603 0.77 -2.8 1,617,049 - SM_b20603 0.77 -0.0 1,617,153 + SM_b20603 0.86 -0.4 1,617,153 + SM_b20603 0.86 +0.5 1,617,154 - SM_b20603 0.86 -0.7 1,617,154 - SM_b20603 0.86 -0.9 1,617,162 + SM_b20603 0.86 -1.2 1,617,163 - SM_b20603 0.86 +0.6 1,617,186 + SM_b20603 0.88 -0.3 1,617,187 - SM_b20603 0.88 +1.7 1,617,532 + SM_b20604 0.13 -0.1 1,617,533 - SM_b20604 0.13 -0.3 1,617,533 - SM_b20604 0.13 -0.6 1,617,536 + SM_b20604 0.13 -1.0 1,617,537 - SM_b20604 0.14 -0.6 1,617,895 + SM_b20604 0.36 -1.1 1,617,895 + SM_b20604 0.36 -0.5 1,617,985 - SM_b20604 0.41 -0.5 1,617,985 - SM_b20604 0.41 +0.3 1,618,077 + SM_b20604 0.47 -0.1 1,618,077 + SM_b20604 0.47 -0.0 1,618,079 + SM_b20604 0.47 -0.2 1,618,079 + SM_b20604 0.47 -0.8 1,618,080 - SM_b20604 0.47 +0.3 1,618,194 - SM_b20604 0.54 +0.6 1,618,194 - SM_b20604 0.54 -0.6 1,618,197 + SM_b20604 0.54 -0.2 1,618,198 + SM_b20604 0.54 +0.9 1,618,198 + SM_b20604 0.54 +0.5 1,618,199 - SM_b20604 0.55 +0.5 1,618,199 - SM_b20604 0.55 -0.1 1,618,199 - SM_b20604 0.55 -0.5 1,618,199 - SM_b20604 0.55 -0.1 1,618,199 - SM_b20604 0.55 -0.5 1,618,722 - SM_b20604 0.87 -0.7 1,619,175 + -0.1 1,619,175 + -0.0 1,619,175 + -0.3 1,619,176 - -0.6 1,619,301 + SM_b20605 0.17 -0.5 1,619,412 + SM_b20605 0.26 -0.5 1,619,412 + SM_b20605 0.26 +0.0 1,619,412 + SM_b20605 0.26 -1.0 1,619,413 - SM_b20605 0.26 -0.2 1,619,413 - SM_b20605 0.26 +0.1 1,619,458 + SM_b20605 0.30 +0.8 1,619,458 + SM_b20605 0.30 +0.1 1,619,459 - SM_b20605 0.30 -0.4 1,619,460 + SM_b20605 0.30 +3.4 1,619,517 + SM_b20605 0.34 -0.8 1,619,799 + SM_b20605 0.56 -1.2 1,619,808 + SM_b20605 0.57 +1.2 1,619,809 - SM_b20605 0.57 -0.7 1,619,809 - SM_b20605 0.57 -0.2 1,619,842 - SM_b20605 0.59 +1.4 1,619,847 + SM_b20605 0.60 -0.8 1,619,848 - SM_b20605 0.60 +0.8
Or see this region's nucleotide sequence