Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20576 and SM_b20577 are separated by 10 nucleotides SM_b20577 and SM_b20578 are separated by 16 nucleotides SM_b20578 and SM_b20579 overlap by 4 nucleotides SM_b20579 and SM_b20580 are separated by 94 nucleotides
SM_b20576: SM_b20576 - protocatechuate 3,4-dioxygenase subunit alpha, at 1,590,598 to 1,591,212
_b20576
SM_b20577: SM_b20577 - protocatechuate 3,4-dioxygenase subunit beta, at 1,591,223 to 1,591,984
_b20577
SM_b20578: SM_b20578 - gamma carboxymuconolactone decarboxylase, at 1,592,001 to 1,592,408
_b20578
SM_b20579: SM_b20579 - beta-ketoadipate enol-lactone hydrolase, at 1,592,405 to 1,593,211
_b20579
SM_b20580: SM_b20580 - LysR family transcriptional regulator, at 1,593,306 to 1,594,247
_b20580
Position (kb)
1592
1593 Strain fitness (log2 ratio)
-2
-1
0
1 at 1591.109 kb on + strand, within SM_b20576 at 1591.112 kb on - strand, within SM_b20576 at 1591.157 kb on + strand at 1591.157 kb on + strand at 1591.158 kb on - strand at 1591.158 kb on - strand at 1591.212 kb on + strand at 1591.416 kb on + strand, within SM_b20577 at 1591.416 kb on + strand, within SM_b20577 at 1591.416 kb on + strand, within SM_b20577 at 1591.416 kb on + strand, within SM_b20577 at 1591.472 kb on - strand, within SM_b20577 at 1591.513 kb on - strand, within SM_b20577 at 1591.759 kb on + strand, within SM_b20577 at 1591.759 kb on + strand, within SM_b20577 at 1592.086 kb on + strand, within SM_b20578 at 1592.086 kb on + strand, within SM_b20578 at 1592.087 kb on - strand, within SM_b20578 at 1592.087 kb on - strand, within SM_b20578 at 1592.087 kb on - strand, within SM_b20578 at 1592.117 kb on + strand, within SM_b20578 at 1592.118 kb on - strand, within SM_b20578 at 1592.343 kb on + strand, within SM_b20578 at 1592.344 kb on - strand, within SM_b20578 at 1592.487 kb on - strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.488 kb on + strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.489 kb on - strand, within SM_b20579 at 1592.529 kb on - strand, within SM_b20579 at 1593.006 kb on + strand, within SM_b20579 at 1593.174 kb on + strand at 1593.267 kb on - strand at 1593.299 kb on - strand at 1593.323 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,591,109 + SM_b20576 0.83 -0.3 1,591,112 - SM_b20576 0.84 -0.1 1,591,157 + -1.7 1,591,157 + -1.9 1,591,158 - +0.5 1,591,158 - -0.0 1,591,212 + +0.3 1,591,416 + SM_b20577 0.25 -0.2 1,591,416 + SM_b20577 0.25 -1.5 1,591,416 + SM_b20577 0.25 +0.0 1,591,416 + SM_b20577 0.25 -0.2 1,591,472 - SM_b20577 0.33 -2.0 1,591,513 - SM_b20577 0.38 +0.2 1,591,759 + SM_b20577 0.70 -0.1 1,591,759 + SM_b20577 0.70 +0.6 1,592,086 + SM_b20578 0.21 -1.1 1,592,086 + SM_b20578 0.21 -0.2 1,592,087 - SM_b20578 0.21 -0.3 1,592,087 - SM_b20578 0.21 -0.2 1,592,087 - SM_b20578 0.21 -1.6 1,592,117 + SM_b20578 0.28 -0.3 1,592,118 - SM_b20578 0.29 -0.6 1,592,343 + SM_b20578 0.84 -0.0 1,592,344 - SM_b20578 0.84 -2.5 1,592,487 - SM_b20579 0.10 -0.2 1,592,488 + SM_b20579 0.10 -0.1 1,592,488 + SM_b20579 0.10 -0.6 1,592,488 + SM_b20579 0.10 -0.4 1,592,489 - SM_b20579 0.10 -0.5 1,592,489 - SM_b20579 0.10 +0.1 1,592,489 - SM_b20579 0.10 -1.7 1,592,489 - SM_b20579 0.10 -0.7 1,592,489 - SM_b20579 0.10 -0.4 1,592,489 - SM_b20579 0.10 +0.6 1,592,489 - SM_b20579 0.10 +0.6 1,592,489 - SM_b20579 0.10 +1.6 1,592,529 - SM_b20579 0.15 +0.0 1,593,006 + SM_b20579 0.74 -0.3 1,593,174 + +0.2 1,593,267 - -0.2 1,593,299 - +0.3 1,593,323 + -0.5
Or see this region's nucleotide sequence