Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20545 and SM_b20546 are separated by 186 nucleotides SM_b20546 and SM_b20547 are separated by 156 nucleotides
SM_b20545: SM_b20545 - hypothetical protein, at 571,438 to 571,656
_b20545
SM_b20546: SM_b20546 - hypothetical protein, at 571,843 to 572,361
_b20546
SM_b20547: SM_b20547 - hypothetical protein, at 572,518 to 572,796
_b20547
Position (kb) 572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 571.670 kb on + strand at 571.739 kb on + strand at 571.845 kb on - strand at 571.845 kb on - strand at 571.845 kb on - strand at 571.939 kb on + strand, within SM_b20546 at 571.939 kb on + strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 571.940 kb on - strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.063 kb on + strand, within SM_b20546 at 572.064 kb on - strand, within SM_b20546 at 572.064 kb on - strand, within SM_b20546 at 572.093 kb on - strand, within SM_b20546 at 572.093 kb on - strand, within SM_b20546 at 572.247 kb on + strand, within SM_b20546 at 572.282 kb on + strand, within SM_b20546 at 572.335 kb on + strand at 572.336 kb on - strand at 572.369 kb on + strand at 572.369 kb on + strand at 572.370 kb on - strand at 572.425 kb on - strand at 572.473 kb on - strand at 572.532 kb on + strand at 572.532 kb on + strand at 572.562 kb on + strand, within SM_b20547 at 572.562 kb on + strand, within SM_b20547 at 572.654 kb on - strand, within SM_b20547 at 572.792 kb on + strand at 572.792 kb on + strand at 572.793 kb on - strand at 572.793 kb on - strand at 572.829 kb on + strand at 572.829 kb on + strand at 573.044 kb on + strand at 573.182 kb on + strand at 573.183 kb on - strand at 573.211 kb on - strand at 573.260 kb on - strand at 573.345 kb on - strand at 573.397 kb on + strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.398 kb on - strand at 573.401 kb on + strand at 573.402 kb on - strand at 573.402 kb on - strand at 573.640 kb on + strand at 573.660 kb on + strand at 573.720 kb on - strand at 573.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 571,670 + -0.5 571,739 + +0.5 571,845 - -1.2 571,845 - -0.0 571,845 - -2.3 571,939 + SM_b20546 0.18 -0.8 571,939 + SM_b20546 0.18 +0.1 571,940 - SM_b20546 0.19 +0.9 571,940 - SM_b20546 0.19 -0.3 571,940 - SM_b20546 0.19 -1.5 572,063 + SM_b20546 0.42 -0.2 572,063 + SM_b20546 0.42 +0.4 572,063 + SM_b20546 0.42 -0.4 572,064 - SM_b20546 0.43 -0.9 572,064 - SM_b20546 0.43 +0.0 572,093 - SM_b20546 0.48 -0.8 572,093 - SM_b20546 0.48 -1.6 572,247 + SM_b20546 0.78 +0.8 572,282 + SM_b20546 0.85 +0.3 572,335 + -0.9 572,336 - +0.3 572,369 + +0.1 572,369 + +0.8 572,370 - +0.0 572,425 - -0.7 572,473 - +2.1 572,532 + -0.3 572,532 + -1.3 572,562 + SM_b20547 0.16 -2.8 572,562 + SM_b20547 0.16 -0.2 572,654 - SM_b20547 0.49 -1.1 572,792 + +0.3 572,792 + +1.1 572,793 - -2.3 572,793 - -0.7 572,829 + -1.0 572,829 + -0.4 573,044 + -0.5 573,182 + +1.0 573,183 - +0.6 573,211 - -0.4 573,260 - -0.3 573,345 - +1.0 573,397 + -0.3 573,398 - -0.2 573,398 - +1.1 573,398 - +0.3 573,398 - -0.8 573,401 + +0.3 573,402 - -1.0 573,402 - -0.8 573,640 + -1.2 573,660 + -0.1 573,720 - -0.7 573,752 - -0.7
Or see this region's nucleotide sequence