Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20508 and SM_b20509 are separated by 188 nucleotides SM_b20509 and SM_b20510 are separated by 46 nucleotides
SM_b20508: SM_b20508 - sugar ABC transporter substrate-binding protein, at 530,452 to 531,435
_b20508
SM_b20509: SM_b20509 - transcriptional regulator, at 531,624 to 532,391
_b20509
SM_b20510: SM_b20510 - galactonate dehydratase, at 532,438 to 533,586
_b20510
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1 at 530.942 kb on + strand, within SM_b20508 at 530.943 kb on - strand, within SM_b20508 at 531.048 kb on + strand, within SM_b20508 at 531.229 kb on + strand, within SM_b20508 at 531.358 kb on + strand at 531.426 kb on + strand at 531.426 kb on + strand at 531.480 kb on + strand at 531.480 kb on + strand at 531.910 kb on + strand, within SM_b20509 at 531.910 kb on + strand, within SM_b20509 at 531.974 kb on + strand, within SM_b20509 at 532.462 kb on + strand at 532.462 kb on + strand at 532.463 kb on - strand at 532.464 kb on + strand at 532.464 kb on + strand at 532.464 kb on + strand at 532.674 kb on + strand, within SM_b20510 at 532.674 kb on + strand, within SM_b20510 at 532.675 kb on - strand, within SM_b20510 at 532.675 kb on - strand, within SM_b20510 at 532.786 kb on + strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.787 kb on - strand, within SM_b20510 at 532.873 kb on - strand, within SM_b20510 at 532.873 kb on - strand, within SM_b20510 at 532.913 kb on - strand, within SM_b20510 at 533.150 kb on - strand, within SM_b20510 at 533.270 kb on - strand, within SM_b20510 at 533.270 kb on - strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.347 kb on + strand, within SM_b20510 at 533.348 kb on - strand, within SM_b20510 at 533.348 kb on - strand, within SM_b20510 at 533.349 kb on + strand, within SM_b20510 at 533.350 kb on - strand, within SM_b20510 at 533.350 kb on - strand, within SM_b20510
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 530,942 + SM_b20508 0.50 -0.1 530,943 - SM_b20508 0.50 +0.1 531,048 + SM_b20508 0.61 -1.6 531,229 + SM_b20508 0.79 -1.2 531,358 + +0.1 531,426 + +0.3 531,426 + +0.2 531,480 + -0.5 531,480 + +0.0 531,910 + SM_b20509 0.37 -1.0 531,910 + SM_b20509 0.37 -0.7 531,974 + SM_b20509 0.46 -1.1 532,462 + +0.1 532,462 + +1.2 532,463 - -0.5 532,464 + +0.4 532,464 + -0.2 532,464 + -0.1 532,674 + SM_b20510 0.21 -1.3 532,674 + SM_b20510 0.21 -1.8 532,675 - SM_b20510 0.21 +0.7 532,675 - SM_b20510 0.21 -0.5 532,786 + SM_b20510 0.30 +0.6 532,787 - SM_b20510 0.30 +0.1 532,787 - SM_b20510 0.30 -1.2 532,787 - SM_b20510 0.30 +1.5 532,873 - SM_b20510 0.38 +0.2 532,873 - SM_b20510 0.38 -1.0 532,913 - SM_b20510 0.41 +0.3 533,150 - SM_b20510 0.62 -0.5 533,270 - SM_b20510 0.72 -0.8 533,270 - SM_b20510 0.72 +0.5 533,347 + SM_b20510 0.79 -0.1 533,347 + SM_b20510 0.79 +0.3 533,347 + SM_b20510 0.79 +0.2 533,348 - SM_b20510 0.79 -0.0 533,348 - SM_b20510 0.79 +1.5 533,349 + SM_b20510 0.79 +0.4 533,350 - SM_b20510 0.79 -0.1 533,350 - SM_b20510 0.79 +0.3
Or see this region's nucleotide sequence