Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20495 and SM_b20496 are separated by 432 nucleotides SM_b20496 and SM_b20497 are separated by 8 nucleotides
SM_b20495: SM_b20495 - hypothetical protein, at 513,218 to 514,921
_b20495
SM_b20496: SM_b20496 - GMC oxidoreductase, at 515,354 to 516,964
_b20496
SM_b20497: SM_b20497 - L-xylulose kinase, at 516,973 to 518,502
_b20497
Position (kb) 515
516
517 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 514.418 kb on + strand, within SM_b20495 at 514.418 kb on - strand, within SM_b20495 at 514.420 kb on + strand, within SM_b20495 at 514.421 kb on - strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.664 kb on + strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.665 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.667 kb on - strand, within SM_b20495 at 514.688 kb on + strand, within SM_b20495 at 514.689 kb on - strand, within SM_b20495 at 514.741 kb on + strand, within SM_b20495 at 514.810 kb on - strand at 514.820 kb on + strand at 514.885 kb on - strand at 514.885 kb on - strand at 515.144 kb on + strand at 515.145 kb on - strand at 515.356 kb on - strand at 515.718 kb on + strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.719 kb on - strand, within SM_b20496 at 515.823 kb on + strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.875 kb on - strand, within SM_b20496 at 515.918 kb on + strand, within SM_b20496 at 515.919 kb on - strand, within SM_b20496 at 515.970 kb on + strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.010 kb on - strand, within SM_b20496 at 516.156 kb on - strand, within SM_b20496 at 516.386 kb on + strand, within SM_b20496 at 516.636 kb on + strand at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.659 kb on - strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.660 kb on + strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.661 kb on - strand, within SM_b20496 at 516.790 kb on - strand, within SM_b20496 at 517.055 kb on + strand at 517.056 kb on - strand at 517.056 kb on - strand at 517.065 kb on - strand at 517.069 kb on - strand at 517.069 kb on - strand at 517.076 kb on + strand at 517.076 kb on + strand at 517.077 kb on - strand at 517.077 kb on - strand at 517.267 kb on + strand, within SM_b20497 at 517.421 kb on + strand, within SM_b20497 at 517.421 kb on + strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.422 kb on - strand, within SM_b20497 at 517.466 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.475 kb on + strand, within SM_b20497 at 517.476 kb on - strand, within SM_b20497 at 517.476 kb on - strand, within SM_b20497 at 517.628 kb on + strand, within SM_b20497
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 514,418 + SM_b20495 0.70 -1.0 514,418 - SM_b20495 0.70 -0.4 514,420 + SM_b20495 0.71 +0.1 514,421 - SM_b20495 0.71 -0.2 514,664 + SM_b20495 0.85 +0.2 514,664 + SM_b20495 0.85 +0.3 514,664 + SM_b20495 0.85 -0.1 514,664 + SM_b20495 0.85 +1.2 514,664 + SM_b20495 0.85 -0.5 514,664 + SM_b20495 0.85 -0.6 514,664 + SM_b20495 0.85 +0.1 514,665 - SM_b20495 0.85 +0.1 514,665 - SM_b20495 0.85 +0.2 514,665 - SM_b20495 0.85 -0.3 514,667 - SM_b20495 0.85 -0.6 514,667 - SM_b20495 0.85 +0.8 514,667 - SM_b20495 0.85 +0.1 514,667 - SM_b20495 0.85 -0.5 514,667 - SM_b20495 0.85 -0.1 514,688 + SM_b20495 0.86 -0.4 514,689 - SM_b20495 0.86 +0.1 514,741 + SM_b20495 0.89 -0.6 514,810 - +1.0 514,820 + +2.9 514,885 - +2.2 514,885 - -0.5 515,144 + +0.0 515,145 - +0.1 515,356 - +0.9 515,718 + SM_b20496 0.23 -0.6 515,719 - SM_b20496 0.23 +0.2 515,719 - SM_b20496 0.23 -0.7 515,719 - SM_b20496 0.23 -0.6 515,823 + SM_b20496 0.29 -0.3 515,875 - SM_b20496 0.32 -0.1 515,875 - SM_b20496 0.32 +1.2 515,875 - SM_b20496 0.32 +0.6 515,875 - SM_b20496 0.32 -0.8 515,918 + SM_b20496 0.35 +0.9 515,919 - SM_b20496 0.35 -0.1 515,970 + SM_b20496 0.38 +1.0 516,010 - SM_b20496 0.41 +0.3 516,010 - SM_b20496 0.41 -0.2 516,010 - SM_b20496 0.41 -0.4 516,010 - SM_b20496 0.41 -0.3 516,010 - SM_b20496 0.41 +0.0 516,156 - SM_b20496 0.50 -0.7 516,386 + SM_b20496 0.64 -0.4 516,636 + +3.0 516,659 - SM_b20496 0.81 +1.1 516,659 - SM_b20496 0.81 +1.0 516,659 - SM_b20496 0.81 -0.0 516,659 - SM_b20496 0.81 +0.9 516,660 + SM_b20496 0.81 -0.2 516,660 + SM_b20496 0.81 +1.6 516,660 + SM_b20496 0.81 +0.2 516,661 - SM_b20496 0.81 -0.1 516,661 - SM_b20496 0.81 +0.6 516,661 - SM_b20496 0.81 +0.6 516,661 - SM_b20496 0.81 +0.2 516,790 - SM_b20496 0.89 +0.6 517,055 + -0.1 517,056 - +0.2 517,056 - -1.8 517,065 - +0.7 517,069 - -1.2 517,069 - +0.0 517,076 + -0.3 517,076 + -0.1 517,077 - -0.3 517,077 - -0.3 517,267 + SM_b20497 0.19 -0.1 517,421 + SM_b20497 0.29 -0.5 517,421 + SM_b20497 0.29 -0.2 517,422 - SM_b20497 0.29 -0.0 517,422 - SM_b20497 0.29 +0.2 517,422 - SM_b20497 0.29 -1.1 517,466 + SM_b20497 0.32 -1.5 517,475 + SM_b20497 0.33 +0.5 517,475 + SM_b20497 0.33 +0.2 517,475 + SM_b20497 0.33 -0.5 517,475 + SM_b20497 0.33 +1.5 517,475 + SM_b20497 0.33 -0.1 517,475 + SM_b20497 0.33 -0.1 517,476 - SM_b20497 0.33 +0.5 517,476 - SM_b20497 0.33 +0.2 517,628 + SM_b20497 0.43 -0.1
Or see this region's nucleotide sequence