Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20493

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20492 and SM_b20493 are separated by 114 nucleotidesSM_b20493 and SM_b20494 are separated by 122 nucleotides SM_b20492: SM_b20492 - short-chain oxidoreductase, at 509,567 to 510,469 _b20492 SM_b20493: SM_b20493 - short-chain dehydrogenase, at 510,584 to 511,318 _b20493 SM_b20494: SM_b20494 - transcriptional regulator, at 511,441 to 512,337 _b20494 Position (kb) 510 511 512Strain fitness (log2 ratio) -2 -1 0 1 2at 509.588 kb on + strandat 509.588 kb on + strandat 509.589 kb on - strandat 509.592 kb on - strandat 509.956 kb on - strand, within SM_b20492at 509.997 kb on + strand, within SM_b20492at 509.998 kb on - strand, within SM_b20492at 510.009 kb on + strand, within SM_b20492at 510.010 kb on - strand, within SM_b20492at 510.010 kb on - strand, within SM_b20492at 510.119 kb on + strand, within SM_b20492at 510.119 kb on + strand, within SM_b20492at 510.120 kb on - strand, within SM_b20492at 510.120 kb on - strand, within SM_b20492at 510.127 kb on + strand, within SM_b20492at 510.132 kb on + strand, within SM_b20492at 510.132 kb on + strand, within SM_b20492at 510.132 kb on + strand, within SM_b20492at 510.133 kb on - strand, within SM_b20492at 510.200 kb on + strand, within SM_b20492at 510.201 kb on - strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.250 kb on + strand, within SM_b20492at 510.251 kb on - strand, within SM_b20492at 510.327 kb on - strand, within SM_b20492at 510.328 kb on + strand, within SM_b20492at 510.328 kb on + strand, within SM_b20492at 510.328 kb on + strand, within SM_b20492at 510.328 kb on + strand, within SM_b20492at 510.329 kb on - strand, within SM_b20492at 510.329 kb on - strand, within SM_b20492at 510.329 kb on - strand, within SM_b20492at 510.378 kb on + strand, within SM_b20492at 510.378 kb on + strand, within SM_b20492at 510.378 kb on + strand, within SM_b20492at 510.379 kb on - strandat 510.379 kb on - strandat 510.379 kb on - strandat 510.379 kb on - strandat 510.668 kb on + strand, within SM_b20493at 510.668 kb on + strand, within SM_b20493at 510.669 kb on - strand, within SM_b20493at 510.669 kb on - strand, within SM_b20493at 510.761 kb on - strand, within SM_b20493at 510.835 kb on + strand, within SM_b20493at 510.864 kb on + strand, within SM_b20493at 510.864 kb on + strand, within SM_b20493at 510.865 kb on - strand, within SM_b20493at 510.873 kb on + strand, within SM_b20493at 510.874 kb on - strand, within SM_b20493at 510.874 kb on - strand, within SM_b20493at 510.910 kb on + strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.911 kb on - strand, within SM_b20493at 510.983 kb on + strand, within SM_b20493at 511.216 kb on - strand, within SM_b20493at 511.302 kb on - strandat 511.319 kb on - strandat 511.319 kb on - strandat 511.434 kb on - strandat 511.458 kb on + strandat 511.459 kb on - strandat 511.539 kb on + strand, within SM_b20494at 511.540 kb on - strand, within SM_b20494at 511.633 kb on + strand, within SM_b20494at 511.633 kb on + strand, within SM_b20494at 511.633 kb on + strand, within SM_b20494at 511.633 kb on + strand, within SM_b20494at 511.633 kb on + strand, within SM_b20494at 511.634 kb on - strand, within SM_b20494at 511.634 kb on - strand, within SM_b20494at 511.636 kb on + strand, within SM_b20494at 511.699 kb on - strand, within SM_b20494at 511.699 kb on - strand, within SM_b20494at 511.720 kb on - strand, within SM_b20494at 511.807 kb on - strand, within SM_b20494at 511.807 kb on - strand, within SM_b20494at 511.849 kb on + strand, within SM_b20494at 511.985 kb on + strand, within SM_b20494at 511.986 kb on - strand, within SM_b20494at 511.986 kb on - strand, within SM_b20494at 512.205 kb on - strandat 512.213 kb on + strand, within SM_b20494at 512.214 kb on - strand, within SM_b20494at 512.254 kb on + strandat 512.254 kb on + strandat 512.254 kb on + strandat 512.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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509,588 + -0.2
509,588 + -1.5
509,589 - +0.4
509,592 - -1.6
509,956 - SM_b20492 0.43 +0.9
509,997 + SM_b20492 0.48 +0.2
509,998 - SM_b20492 0.48 +0.5
510,009 + SM_b20492 0.49 +0.1
510,010 - SM_b20492 0.49 -0.7
510,010 - SM_b20492 0.49 -0.4
510,119 + SM_b20492 0.61 -1.8
510,119 + SM_b20492 0.61 +0.0
510,120 - SM_b20492 0.61 -0.7
510,120 - SM_b20492 0.61 -1.1
510,127 + SM_b20492 0.62 -1.3
510,132 + SM_b20492 0.63 -0.4
510,132 + SM_b20492 0.63 -1.1
510,132 + SM_b20492 0.63 -0.4
510,133 - SM_b20492 0.63 +0.2
510,200 + SM_b20492 0.70 +0.2
510,201 - SM_b20492 0.70 +0.6
510,250 + SM_b20492 0.76 -0.4
510,250 + SM_b20492 0.76 -1.4
510,250 + SM_b20492 0.76 +0.3
510,250 + SM_b20492 0.76 -1.1
510,250 + SM_b20492 0.76 -0.1
510,251 - SM_b20492 0.76 -0.1
510,327 - SM_b20492 0.84 +0.3
510,328 + SM_b20492 0.84 +0.5
510,328 + SM_b20492 0.84 +0.3
510,328 + SM_b20492 0.84 +0.3
510,328 + SM_b20492 0.84 +1.1
510,329 - SM_b20492 0.84 +1.2
510,329 - SM_b20492 0.84 +1.0
510,329 - SM_b20492 0.84 +0.7
510,378 + SM_b20492 0.90 -0.7
510,378 + SM_b20492 0.90 +0.7
510,378 + SM_b20492 0.90 +0.1
510,379 - -2.3
510,379 - +0.3
510,379 - +0.1
510,379 - +0.2
510,668 + SM_b20493 0.11 +0.0
510,668 + SM_b20493 0.11 +0.3
510,669 - SM_b20493 0.12 +0.3
510,669 - SM_b20493 0.12 +0.3
510,761 - SM_b20493 0.24 -0.5
510,835 + SM_b20493 0.34 -0.1
510,864 + SM_b20493 0.38 +0.1
510,864 + SM_b20493 0.38 +1.5
510,865 - SM_b20493 0.38 +0.4
510,873 + SM_b20493 0.39 +0.7
510,874 - SM_b20493 0.39 +0.4
510,874 - SM_b20493 0.39 +0.2
510,910 + SM_b20493 0.44 +0.5
510,911 - SM_b20493 0.44 +0.2
510,911 - SM_b20493 0.44 -0.2
510,911 - SM_b20493 0.44 +1.7
510,911 - SM_b20493 0.44 +0.3
510,911 - SM_b20493 0.44 -0.0
510,911 - SM_b20493 0.44 +1.3
510,911 - SM_b20493 0.44 -0.1
510,983 + SM_b20493 0.54 -0.1
511,216 - SM_b20493 0.86 -0.1
511,302 - -0.2
511,319 - -0.4
511,319 - +0.2
511,434 - -0.8
511,458 + +0.1
511,459 - -0.6
511,539 + SM_b20494 0.11 -0.5
511,540 - SM_b20494 0.11 +0.4
511,633 + SM_b20494 0.21 -0.2
511,633 + SM_b20494 0.21 -0.4
511,633 + SM_b20494 0.21 +0.9
511,633 + SM_b20494 0.21 -0.7
511,633 + SM_b20494 0.21 -0.1
511,634 - SM_b20494 0.22 -0.4
511,634 - SM_b20494 0.22 +0.4
511,636 + SM_b20494 0.22 +0.1
511,699 - SM_b20494 0.29 +1.2
511,699 - SM_b20494 0.29 -0.0
511,720 - SM_b20494 0.31 -0.0
511,807 - SM_b20494 0.41 -2.3
511,807 - SM_b20494 0.41 -0.4
511,849 + SM_b20494 0.45 -0.5
511,985 + SM_b20494 0.61 -0.9
511,986 - SM_b20494 0.61 -0.8
511,986 - SM_b20494 0.61 -0.6
512,205 - -0.1
512,213 + SM_b20494 0.86 +0.1
512,214 - SM_b20494 0.86 +0.0
512,254 + +0.5
512,254 + -0.1
512,254 + +0.6
512,255 - +2.2

Or see this region's nucleotide sequence