Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20446 and SM_b20447 are separated by 275 nucleotides SM_b20447 and SM_b20448 are separated by 75 nucleotides SM_b20448 and SM_b20449 are separated by 116 nucleotides
SM_b20446: SM_b20446 - mannonate dehydratase, at 457,381 to 458,589
_b20446
SM_b20447: SM_b20447 - hypothetical protein, at 458,865 to 460,559
_b20447
SM_b20448: SM_b20448 - hypothetical protein, at 460,635 to 461,153
_b20448
SM_b20449: SM_b20449 - methyltransferase, at 461,270 to 462,328
_b20449
Position (kb) 458
459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 457.909 kb on - strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.978 kb on + strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 457.979 kb on - strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.140 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.300 kb on + strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.301 kb on - strand, within SM_b20446 at 458.563 kb on + strand at 458.564 kb on - strand at 458.564 kb on - strand at 458.564 kb on - strand at 458.602 kb on + strand at 458.616 kb on - strand at 458.677 kb on - strand at 458.805 kb on + strand at 458.815 kb on + strand at 458.950 kb on - strand at 459.042 kb on + strand, within SM_b20447 at 459.042 kb on + strand, within SM_b20447 at 459.043 kb on - strand, within SM_b20447 at 459.213 kb on + strand, within SM_b20447 at 459.259 kb on + strand, within SM_b20447 at 459.259 kb on + strand, within SM_b20447 at 459.260 kb on - strand, within SM_b20447 at 459.490 kb on - strand, within SM_b20447 at 459.497 kb on - strand, within SM_b20447 at 459.705 kb on + strand, within SM_b20447 at 459.705 kb on + strand, within SM_b20447 at 459.705 kb on + strand, within SM_b20447 at 459.706 kb on - strand, within SM_b20447 at 459.706 kb on - strand, within SM_b20447 at 459.832 kb on + strand, within SM_b20447 at 459.832 kb on + strand, within SM_b20447 at 459.838 kb on - strand, within SM_b20447 at 459.838 kb on - strand, within SM_b20447 at 460.079 kb on + strand, within SM_b20447 at 460.080 kb on - strand, within SM_b20447 at 460.169 kb on + strand, within SM_b20447 at 460.188 kb on - strand, within SM_b20447 at 460.197 kb on - strand, within SM_b20447 at 460.248 kb on + strand, within SM_b20447 at 460.263 kb on + strand, within SM_b20447 at 460.305 kb on + strand, within SM_b20447 at 460.306 kb on - strand, within SM_b20447 at 460.591 kb on - strand at 460.766 kb on - strand, within SM_b20448 at 460.787 kb on + strand, within SM_b20448 at 460.787 kb on + strand, within SM_b20448 at 460.831 kb on + strand at 460.832 kb on - strand, within SM_b20448 at 460.953 kb on - strand, within SM_b20448 at 460.998 kb on + strand, within SM_b20448 at 461.155 kb on + strand at 461.156 kb on - strand at 461.265 kb on + strand at 461.266 kb on - strand at 461.275 kb on + strand at 461.276 kb on - strand at 461.276 kb on - strand at 461.276 kb on - strand at 461.309 kb on + strand at 461.309 kb on + strand at 461.309 kb on + strand at 461.310 kb on - strand at 461.310 kb on - strand at 461.310 kb on - strand at 461.351 kb on + strand at 461.351 kb on + strand at 461.352 kb on - strand at 461.498 kb on + strand, within SM_b20449
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 457,909 - SM_b20446 0.44 -0.8 457,978 + SM_b20446 0.49 +0.3 457,978 + SM_b20446 0.49 +0.1 457,978 + SM_b20446 0.49 +0.4 457,978 + SM_b20446 0.49 +0.5 457,978 + SM_b20446 0.49 -0.1 457,978 + SM_b20446 0.49 -0.5 457,979 - SM_b20446 0.49 -0.1 457,979 - SM_b20446 0.49 -0.1 458,140 + SM_b20446 0.63 -0.4 458,140 + SM_b20446 0.63 -1.0 458,300 + SM_b20446 0.76 -0.3 458,300 + SM_b20446 0.76 -0.1 458,301 - SM_b20446 0.76 -0.2 458,301 - SM_b20446 0.76 +0.7 458,563 + -0.4 458,564 - +0.2 458,564 - -0.0 458,564 - +1.6 458,602 + -0.2 458,616 - +0.1 458,677 - -1.4 458,805 + -1.1 458,815 + +0.2 458,950 - -0.7 459,042 + SM_b20447 0.10 -0.4 459,042 + SM_b20447 0.10 +0.4 459,043 - SM_b20447 0.11 +0.1 459,213 + SM_b20447 0.21 -0.3 459,259 + SM_b20447 0.23 -0.8 459,259 + SM_b20447 0.23 +2.9 459,260 - SM_b20447 0.23 -1.8 459,490 - SM_b20447 0.37 -0.9 459,497 - SM_b20447 0.37 -0.3 459,705 + SM_b20447 0.50 -0.1 459,705 + SM_b20447 0.50 -1.0 459,705 + SM_b20447 0.50 -0.8 459,706 - SM_b20447 0.50 -2.4 459,706 - SM_b20447 0.50 -0.5 459,832 + SM_b20447 0.57 -0.1 459,832 + SM_b20447 0.57 -1.3 459,838 - SM_b20447 0.57 -1.3 459,838 - SM_b20447 0.57 -1.4 460,079 + SM_b20447 0.72 -1.5 460,080 - SM_b20447 0.72 -0.8 460,169 + SM_b20447 0.77 -0.9 460,188 - SM_b20447 0.78 -0.5 460,197 - SM_b20447 0.79 -1.2 460,248 + SM_b20447 0.82 +0.8 460,263 + SM_b20447 0.82 -0.8 460,305 + SM_b20447 0.85 -0.4 460,306 - SM_b20447 0.85 -1.3 460,591 - -0.7 460,766 - SM_b20448 0.25 +2.7 460,787 + SM_b20448 0.29 +0.9 460,787 + SM_b20448 0.29 +0.6 460,831 + +0.6 460,832 - SM_b20448 0.38 -1.7 460,953 - SM_b20448 0.61 +0.2 460,998 + SM_b20448 0.70 +0.6 461,155 + -2.0 461,156 - -1.3 461,265 + -0.9 461,266 - -1.6 461,275 + -0.4 461,276 - -1.1 461,276 - -1.4 461,276 - +1.2 461,309 + -0.3 461,309 + -0.2 461,309 + +1.1 461,310 - -2.0 461,310 - -0.9 461,310 - -0.9 461,351 + +0.2 461,351 + -1.0 461,352 - +1.2 461,498 + SM_b20449 0.22 +0.3
Or see this region's nucleotide sequence