Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20442 and SM_b20443 are separated by 67 nucleotides SM_b20443 and SM_b20444 are separated by 5 nucleotides
SM_b20442: SM_b20442 - substrate-binding protein, at 453,287 to 454,261
_b20442
SM_b20443: SM_b20443 - permease, at 454,329 to 454,901
_b20443
SM_b20444: SM_b20444 - hypothetical protein, at 454,907 to 456,313
_b20444
Position (kb) 454
455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 453.386 kb on + strand, within SM_b20442 at 453.387 kb on - strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.461 kb on + strand, within SM_b20442 at 453.462 kb on - strand, within SM_b20442 at 453.542 kb on - strand, within SM_b20442 at 453.599 kb on + strand, within SM_b20442 at 453.600 kb on - strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.610 kb on + strand, within SM_b20442 at 453.611 kb on - strand, within SM_b20442 at 453.643 kb on + strand, within SM_b20442 at 453.657 kb on + strand, within SM_b20442 at 453.658 kb on - strand, within SM_b20442 at 453.680 kb on + strand, within SM_b20442 at 453.680 kb on + strand, within SM_b20442 at 453.681 kb on - strand, within SM_b20442 at 453.719 kb on + strand, within SM_b20442 at 453.719 kb on + strand, within SM_b20442 at 453.720 kb on - strand, within SM_b20442 at 453.720 kb on - strand, within SM_b20442 at 453.722 kb on + strand, within SM_b20442 at 453.796 kb on - strand, within SM_b20442 at 453.812 kb on + strand, within SM_b20442 at 453.872 kb on + strand, within SM_b20442 at 453.873 kb on - strand, within SM_b20442 at 453.873 kb on - strand, within SM_b20442 at 453.962 kb on - strand, within SM_b20442 at 453.962 kb on - strand, within SM_b20442 at 454.416 kb on + strand, within SM_b20443 at 454.417 kb on - strand, within SM_b20443 at 454.417 kb on - strand, within SM_b20443 at 454.495 kb on - strand, within SM_b20443 at 454.513 kb on - strand, within SM_b20443 at 454.617 kb on + strand, within SM_b20443 at 454.617 kb on + strand, within SM_b20443 at 454.617 kb on + strand at 454.617 kb on + strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.618 kb on - strand, within SM_b20443 at 454.624 kb on - strand, within SM_b20443 at 454.693 kb on - strand, within SM_b20443 at 454.716 kb on + strand, within SM_b20443 at 454.716 kb on + strand, within SM_b20443 at 454.753 kb on + strand, within SM_b20443 at 454.779 kb on + strand, within SM_b20443 at 454.780 kb on - strand, within SM_b20443 at 454.780 kb on - strand, within SM_b20443 at 454.854 kb on + strand at 454.935 kb on + strand at 454.936 kb on - strand at 454.936 kb on - strand at 454.991 kb on + strand at 455.003 kb on + strand at 455.004 kb on - strand at 455.135 kb on + strand, within SM_b20444 at 455.136 kb on - strand, within SM_b20444 at 455.376 kb on - strand, within SM_b20444 at 455.481 kb on - strand, within SM_b20444 at 455.579 kb on + strand, within SM_b20444 at 455.580 kb on - strand, within SM_b20444 at 455.732 kb on - strand, within SM_b20444
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 453,386 + SM_b20442 0.10 +0.0 453,387 - SM_b20442 0.10 -0.2 453,461 + SM_b20442 0.18 +1.2 453,461 + SM_b20442 0.18 +0.3 453,461 + SM_b20442 0.18 +0.2 453,462 - SM_b20442 0.18 +0.9 453,542 - SM_b20442 0.26 +0.2 453,599 + SM_b20442 0.32 +0.1 453,600 - SM_b20442 0.32 -1.5 453,610 + SM_b20442 0.33 +0.4 453,610 + SM_b20442 0.33 -0.2 453,610 + SM_b20442 0.33 +0.1 453,611 - SM_b20442 0.33 +0.6 453,643 + SM_b20442 0.37 -0.8 453,657 + SM_b20442 0.38 +0.1 453,658 - SM_b20442 0.38 -0.7 453,680 + SM_b20442 0.40 -0.8 453,680 + SM_b20442 0.40 +0.8 453,681 - SM_b20442 0.40 -0.4 453,719 + SM_b20442 0.44 -0.1 453,719 + SM_b20442 0.44 -0.2 453,720 - SM_b20442 0.44 -2.4 453,720 - SM_b20442 0.44 -0.0 453,722 + SM_b20442 0.45 +0.0 453,796 - SM_b20442 0.52 -0.2 453,812 + SM_b20442 0.54 -2.9 453,872 + SM_b20442 0.60 +0.5 453,873 - SM_b20442 0.60 +0.5 453,873 - SM_b20442 0.60 -0.6 453,962 - SM_b20442 0.69 -0.0 453,962 - SM_b20442 0.69 -0.2 454,416 + SM_b20443 0.15 -0.3 454,417 - SM_b20443 0.15 +0.3 454,417 - SM_b20443 0.15 +0.9 454,495 - SM_b20443 0.29 -0.7 454,513 - SM_b20443 0.32 +0.2 454,617 + SM_b20443 0.50 -0.1 454,617 + SM_b20443 0.50 +0.6 454,617 + +2.5 454,617 + SM_b20443 0.50 +0.7 454,618 - SM_b20443 0.50 -0.2 454,618 - SM_b20443 0.50 +0.2 454,618 - SM_b20443 0.50 -1.0 454,618 - SM_b20443 0.50 +0.1 454,618 - SM_b20443 0.50 +0.2 454,624 - SM_b20443 0.51 +0.7 454,693 - SM_b20443 0.64 +0.4 454,716 + SM_b20443 0.68 +1.1 454,716 + SM_b20443 0.68 +1.6 454,753 + SM_b20443 0.74 +0.6 454,779 + SM_b20443 0.79 +0.1 454,780 - SM_b20443 0.79 +0.4 454,780 - SM_b20443 0.79 +0.1 454,854 + -0.2 454,935 + -0.1 454,936 - -1.1 454,936 - -0.1 454,991 + -0.0 455,003 + +0.7 455,004 - -0.6 455,135 + SM_b20444 0.16 +1.8 455,136 - SM_b20444 0.16 -1.0 455,376 - SM_b20444 0.33 -1.0 455,481 - SM_b20444 0.41 +0.4 455,579 + SM_b20444 0.48 +0.3 455,580 - SM_b20444 0.48 -1.3 455,732 - SM_b20444 0.59 +0.0
Or see this region's nucleotide sequence