Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20410 and SM_b20411 are separated by 15 nucleotides SM_b20411 and SM_b20412 are separated by 30 nucleotides SM_b20412 and SM_b20413 overlap by 4 nucleotides SM_b20413 and SM_b20414 are separated by 180 nucleotides SM_b20414 and SM_b20415 overlap by 1 nucleotides
SM_b20410: SM_b20410 - glycine-betaine-binding protein, at 425,740 to 426,678
_b20410
SM_b20411: SM_b20411 - hypothetical protein, at 426,694 to 426,942
_b20411
SM_b20412: SM_b20412 - hypothetical protein, at 426,973 to 427,137
_b20412
SM_b20413: SM_b20413 - hypothetical protein, at 427,134 to 427,361
_b20413
SM_b20414: SM_b20414 - hypothetical protein, at 427,542 to 428,015
_b20414
SM_b20415: SM_b20415 - oxidoreductase, at 428,015 to 429,304
_b20415
Position (kb) 427
428 Strain fitness (log2 ratio) -2
-1
0
1 at 426.373 kb on + strand, within SM_b20410 at 426.373 kb on + strand, within SM_b20410 at 426.374 kb on - strand, within SM_b20410 at 426.409 kb on + strand, within SM_b20410 at 426.423 kb on + strand, within SM_b20410 at 426.423 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.427 kb on + strand, within SM_b20410 at 426.428 kb on - strand, within SM_b20410 at 426.428 kb on - strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.429 kb on + strand, within SM_b20410 at 426.465 kb on + strand, within SM_b20410 at 426.465 kb on + strand, within SM_b20410 at 426.466 kb on - strand, within SM_b20410 at 426.466 kb on - strand, within SM_b20410 at 426.702 kb on + strand at 426.815 kb on + strand, within SM_b20411 at 426.816 kb on - strand, within SM_b20411 at 426.816 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 426.862 kb on - strand, within SM_b20411 at 427.081 kb on + strand, within SM_b20412 at 427.081 kb on + strand, within SM_b20412 at 427.083 kb on + strand, within SM_b20412 at 427.084 kb on - strand, within SM_b20412 at 427.215 kb on + strand, within SM_b20413 at 427.397 kb on + strand at 427.397 kb on + strand at 427.646 kb on - strand, within SM_b20414 at 427.750 kb on + strand, within SM_b20414 at 428.008 kb on + strand at 428.009 kb on - strand at 428.032 kb on + strand at 428.033 kb on - strand at 428.298 kb on + strand, within SM_b20415
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 426,373 + SM_b20410 0.67 -0.5 426,373 + SM_b20410 0.67 -0.1 426,374 - SM_b20410 0.68 +1.2 426,409 + SM_b20410 0.71 -0.3 426,423 + SM_b20410 0.73 +0.4 426,423 + SM_b20410 0.73 -0.7 426,427 + SM_b20410 0.73 +0.3 426,427 + SM_b20410 0.73 +1.5 426,427 + SM_b20410 0.73 +0.1 426,427 + SM_b20410 0.73 -0.3 426,427 + SM_b20410 0.73 -0.3 426,427 + SM_b20410 0.73 +0.5 426,428 - SM_b20410 0.73 +0.2 426,428 - SM_b20410 0.73 -0.7 426,429 + SM_b20410 0.73 +0.7 426,429 + SM_b20410 0.73 +0.1 426,429 + SM_b20410 0.73 -0.2 426,465 + SM_b20410 0.77 +0.1 426,465 + SM_b20410 0.77 -1.0 426,466 - SM_b20410 0.77 +0.2 426,466 - SM_b20410 0.77 +0.1 426,702 + +0.1 426,815 + SM_b20411 0.49 -0.8 426,816 - SM_b20411 0.49 +0.0 426,816 - SM_b20411 0.49 -0.2 426,862 - SM_b20411 0.67 +0.9 426,862 - SM_b20411 0.67 -0.9 426,862 - SM_b20411 0.67 +0.2 427,081 + SM_b20412 0.65 +1.0 427,081 + SM_b20412 0.65 +0.4 427,083 + SM_b20412 0.67 +0.7 427,084 - SM_b20412 0.67 +0.4 427,215 + SM_b20413 0.36 -1.3 427,397 + -2.3 427,397 + +0.6 427,646 - SM_b20414 0.22 +0.7 427,750 + SM_b20414 0.44 +1.4 428,008 + -0.1 428,009 - +1.2 428,032 + -0.4 428,033 - -0.0 428,298 + SM_b20415 0.22 -1.0
Or see this region's nucleotide sequence