Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20368 and SM_b20369 are separated by 5 nucleotides SM_b20369 and SM_b20370 overlap by 4 nucleotides SM_b20370 and SM_b20371 are separated by 44 nucleotides
SM_b20368: SM_b20368 - hypothetical protein, at 380,366 to 381,379
_b20368
SM_b20369: SM_b20369 - hypothetical protein, at 381,385 to 382,626
_b20369
SM_b20370: SM_b20370 - ATP-binding transport protein, at 382,623 to 383,303
_b20370
SM_b20371: SM_b20371 - ribose-5-phosphate isomerase B, at 383,348 to 383,794
_b20371
Position (kb) 381
382
383 Strain fitness (log2 ratio) -2
-1
0
1 at 380.501 kb on + strand, within SM_b20368 at 380.501 kb on + strand, within SM_b20368 at 380.502 kb on - strand, within SM_b20368 at 380.988 kb on - strand, within SM_b20368 at 380.988 kb on - strand, within SM_b20368 at 381.044 kb on - strand, within SM_b20368 at 381.065 kb on - strand, within SM_b20368 at 381.074 kb on + strand, within SM_b20368 at 381.075 kb on - strand, within SM_b20368 at 381.135 kb on + strand, within SM_b20368 at 381.273 kb on + strand, within SM_b20368 at 381.273 kb on + strand, within SM_b20368 at 381.274 kb on - strand, within SM_b20368 at 381.274 kb on - strand, within SM_b20368 at 381.309 kb on + strand at 381.310 kb on - strand at 381.892 kb on - strand, within SM_b20369 at 382.025 kb on - strand, within SM_b20369 at 382.025 kb on - strand, within SM_b20369 at 382.025 kb on - strand, within SM_b20369 at 382.222 kb on + strand, within SM_b20369 at 382.223 kb on - strand, within SM_b20369 at 382.432 kb on + strand, within SM_b20369 at 382.433 kb on - strand, within SM_b20369 at 382.433 kb on - strand, within SM_b20369 at 382.516 kb on + strand at 382.524 kb on - strand at 382.524 kb on - strand at 382.610 kb on + strand at 382.611 kb on - strand at 382.658 kb on + strand at 382.658 kb on + strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.659 kb on - strand at 382.660 kb on + strand at 382.660 kb on + strand at 382.661 kb on - strand at 382.661 kb on - strand at 382.661 kb on - strand at 382.773 kb on + strand, within SM_b20370 at 382.774 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 382.878 kb on - strand, within SM_b20370 at 383.171 kb on - strand, within SM_b20370 at 383.301 kb on + strand at 383.302 kb on - strand at 383.428 kb on - strand, within SM_b20371
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 380,501 + SM_b20368 0.13 -0.4 380,501 + SM_b20368 0.13 -0.1 380,502 - SM_b20368 0.13 -0.3 380,988 - SM_b20368 0.61 +0.5 380,988 - SM_b20368 0.61 -0.4 381,044 - SM_b20368 0.67 +0.3 381,065 - SM_b20368 0.69 +1.3 381,074 + SM_b20368 0.70 +0.8 381,075 - SM_b20368 0.70 -0.8 381,135 + SM_b20368 0.76 +0.5 381,273 + SM_b20368 0.89 -0.3 381,273 + SM_b20368 0.89 +0.6 381,274 - SM_b20368 0.90 +0.3 381,274 - SM_b20368 0.90 -0.4 381,309 + -0.5 381,310 - -1.2 381,892 - SM_b20369 0.41 -0.2 382,025 - SM_b20369 0.52 +0.8 382,025 - SM_b20369 0.52 -0.4 382,025 - SM_b20369 0.52 +0.9 382,222 + SM_b20369 0.67 +0.6 382,223 - SM_b20369 0.67 +1.0 382,432 + SM_b20369 0.84 +1.3 382,433 - SM_b20369 0.84 -1.0 382,433 - SM_b20369 0.84 -0.4 382,516 + -1.1 382,524 - -0.2 382,524 - -0.2 382,610 + +0.7 382,611 - -1.5 382,658 + +0.9 382,658 + -0.1 382,659 - -0.4 382,659 - -2.4 382,659 - -0.0 382,659 - -1.0 382,660 + -0.1 382,660 + +0.2 382,661 - -0.1 382,661 - +0.5 382,661 - +0.3 382,773 + SM_b20370 0.22 -0.8 382,774 - SM_b20370 0.22 -1.5 382,878 - SM_b20370 0.37 -0.0 382,878 - SM_b20370 0.37 -0.6 383,171 - SM_b20370 0.80 -0.1 383,301 + -0.6 383,302 - +0.0 383,428 - SM_b20371 0.18 -1.1
Or see this region's nucleotide sequence