Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20270 and SM_b20271 are separated by 83 nucleotides SM_b20271 and SM_b20272 are separated by 400 nucleotides SM_b20272 and SM_b20273 are separated by 72 nucleotides SM_b20273 and SM_b20274 are separated by 255 nucleotides SM_b20274 and SM_b20275 are separated by 177 nucleotides
SM_b20270: SM_b20270 - proline racemase, at 275,434 to 276,462
_b20270
SM_b20271: SM_b20271 - hypothetical protein, at 276,546 to 276,977
_b20271
SM_b20272: SM_b20272 - transporter protein, at 277,378 to 278,586
_b20272
SM_b20273: SM_b20273 - hypothetical protein, at 278,659 to 278,844
_b20273
SM_b20274: SM_b20274 - hypothetical protein, at 279,100 to 279,285
_b20274
SM_b20275: SM_b20275 - hypothetical protein, at 279,463 to 280,323
_b20275
Position (kb) 277
278
279 Strain fitness (log2 ratio) -2
-1
0
1
2 at 276.378 kb on + strand at 276.641 kb on + strand, within SM_b20271 at 277.087 kb on + strand at 277.088 kb on - strand at 277.265 kb on + strand at 277.265 kb on + strand at 277.266 kb on - strand at 277.266 kb on - strand at 277.394 kb on - strand at 277.512 kb on + strand, within SM_b20272 at 277.513 kb on - strand, within SM_b20272 at 277.514 kb on + strand, within SM_b20272 at 277.560 kb on + strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.561 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.782 kb on - strand, within SM_b20272 at 277.849 kb on - strand, within SM_b20272 at 277.855 kb on + strand, within SM_b20272 at 277.856 kb on - strand, within SM_b20272 at 277.883 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272 at 277.953 kb on + strand, within SM_b20272 at 278.030 kb on + strand, within SM_b20272 at 278.031 kb on - strand, within SM_b20272 at 278.095 kb on + strand, within SM_b20272 at 278.095 kb on + strand, within SM_b20272 at 278.323 kb on + strand, within SM_b20272 at 278.324 kb on - strand, within SM_b20272 at 278.324 kb on - strand, within SM_b20272 at 278.461 kb on + strand, within SM_b20272 at 278.461 kb on + strand, within SM_b20272 at 278.462 kb on - strand, within SM_b20272 at 278.479 kb on + strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.480 kb on - strand at 278.491 kb on + strand at 278.492 kb on - strand at 278.667 kb on + strand at 278.725 kb on + strand, within SM_b20273 at 278.727 kb on + strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 278.728 kb on - strand, within SM_b20273 at 279.045 kb on - strand at 279.102 kb on - strand at 279.138 kb on - strand, within SM_b20274 at 279.189 kb on - strand, within SM_b20274 at 279.206 kb on - strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.217 kb on + strand, within SM_b20274 at 279.227 kb on - strand, within SM_b20274 at 279.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 276,378 + -0.7 276,641 + SM_b20271 0.22 -0.2 277,087 + -0.6 277,088 - -0.3 277,265 + +0.2 277,265 + -0.5 277,266 - +0.1 277,266 - +0.0 277,394 - +0.9 277,512 + SM_b20272 0.11 +1.5 277,513 - SM_b20272 0.11 +0.3 277,514 + SM_b20272 0.11 +1.1 277,560 + SM_b20272 0.15 +1.7 277,561 - SM_b20272 0.15 +0.4 277,561 - SM_b20272 0.15 -0.5 277,561 - SM_b20272 0.15 +2.1 277,561 - SM_b20272 0.15 +1.1 277,782 - SM_b20272 0.33 +0.4 277,782 - SM_b20272 0.33 -0.6 277,849 - SM_b20272 0.39 -1.3 277,855 + SM_b20272 0.39 -0.1 277,856 - SM_b20272 0.40 +0.1 277,883 + SM_b20272 0.42 +0.2 277,953 + SM_b20272 0.48 +0.8 277,953 + SM_b20272 0.48 +0.0 278,030 + SM_b20272 0.54 +0.2 278,031 - SM_b20272 0.54 +0.2 278,095 + SM_b20272 0.59 -0.6 278,095 + SM_b20272 0.59 +0.7 278,323 + SM_b20272 0.78 +0.4 278,324 - SM_b20272 0.78 -1.2 278,324 - SM_b20272 0.78 -1.2 278,461 + SM_b20272 0.90 +0.5 278,461 + SM_b20272 0.90 +0.2 278,462 - SM_b20272 0.90 -1.2 278,479 + -0.1 278,480 - +0.2 278,480 - +0.8 278,480 - +0.4 278,491 + +0.0 278,492 - -0.8 278,667 + +0.8 278,725 + SM_b20273 0.35 -0.7 278,727 + SM_b20273 0.37 -0.5 278,728 - SM_b20273 0.37 -2.1 278,728 - SM_b20273 0.37 -0.6 279,045 - -1.1 279,102 - -0.4 279,138 - SM_b20274 0.20 +0.2 279,189 - SM_b20274 0.48 +1.0 279,206 - SM_b20274 0.57 +0.4 279,217 + SM_b20274 0.63 +0.2 279,217 + SM_b20274 0.63 -0.0 279,227 - SM_b20274 0.68 +0.1 279,334 - +1.1
Or see this region's nucleotide sequence