Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20230

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20229 and SM_b20230 are separated by 231 nucleotidesSM_b20230 and SM_b20231 are separated by 59 nucleotides SM_b20229: SM_b20229 - nutrient deprivation-induced protein, at 233,826 to 234,800 _b20229 SM_b20230: SM_b20230 - smc22-r protein, at 235,032 to 236,036 _b20230 SM_b20231: SM_b20231 - sugar ABC transporter substrate-binding protein, at 236,096 to 237,451 _b20231 Position (kb) 235 236 237Strain fitness (log2 ratio) -2 -1 0 1 2at 234.130 kb on - strand, within SM_b20229at 234.130 kb on - strand, within SM_b20229at 234.198 kb on + strand, within SM_b20229at 234.298 kb on - strand, within SM_b20229at 234.298 kb on - strand, within SM_b20229at 234.308 kb on + strand, within SM_b20229at 234.309 kb on - strand, within SM_b20229at 234.309 kb on - strand, within SM_b20229at 234.338 kb on + strand, within SM_b20229at 234.339 kb on - strand, within SM_b20229at 234.593 kb on - strand, within SM_b20229at 235.069 kb on + strandat 235.070 kb on - strandat 235.130 kb on + strandat 235.130 kb on + strandat 235.131 kb on - strandat 235.164 kb on + strand, within SM_b20230at 235.165 kb on - strand, within SM_b20230at 235.168 kb on + strand, within SM_b20230at 235.252 kb on - strand, within SM_b20230at 235.264 kb on + strand, within SM_b20230at 235.306 kb on + strand, within SM_b20230at 235.307 kb on - strand, within SM_b20230at 235.307 kb on - strand, within SM_b20230at 235.352 kb on + strand, within SM_b20230at 235.376 kb on - strand, within SM_b20230at 235.376 kb on - strand, within SM_b20230at 235.450 kb on + strand, within SM_b20230at 235.450 kb on + strand, within SM_b20230at 235.450 kb on + strand, within SM_b20230at 235.451 kb on - strand, within SM_b20230at 235.451 kb on - strand, within SM_b20230at 235.531 kb on - strand, within SM_b20230at 235.545 kb on + strand, within SM_b20230at 235.692 kb on + strand, within SM_b20230at 235.692 kb on + strand, within SM_b20230at 235.692 kb on + strand, within SM_b20230at 235.693 kb on - strand, within SM_b20230at 235.693 kb on - strand, within SM_b20230at 235.693 kb on - strand, within SM_b20230at 235.698 kb on - strand, within SM_b20230at 235.754 kb on - strand, within SM_b20230at 235.754 kb on - strand, within SM_b20230at 235.881 kb on + strand, within SM_b20230at 236.074 kb on - strandat 236.199 kb on - strandat 236.255 kb on + strand, within SM_b20231at 236.256 kb on - strand, within SM_b20231at 236.369 kb on + strand, within SM_b20231at 236.370 kb on - strand, within SM_b20231at 236.370 kb on - strand, within SM_b20231at 236.371 kb on + strand, within SM_b20231at 236.371 kb on + strand, within SM_b20231at 236.424 kb on + strand, within SM_b20231at 236.424 kb on + strand, within SM_b20231at 236.425 kb on - strand, within SM_b20231at 236.425 kb on - strand, within SM_b20231at 236.425 kb on - strand, within SM_b20231at 236.425 kb on - strand, within SM_b20231at 236.456 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.459 kb on + strand, within SM_b20231at 236.460 kb on - strand, within SM_b20231at 236.461 kb on + strand, within SM_b20231at 236.461 kb on + strand, within SM_b20231at 236.600 kb on + strand, within SM_b20231at 236.601 kb on - strand, within SM_b20231at 236.738 kb on + strand, within SM_b20231at 236.939 kb on + strand, within SM_b20231

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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234,130 - SM_b20229 0.31 +0.2
234,130 - SM_b20229 0.31 -0.3
234,198 + SM_b20229 0.38 -0.1
234,298 - SM_b20229 0.48 -1.6
234,298 - SM_b20229 0.48 -1.0
234,308 + SM_b20229 0.49 +2.2
234,309 - SM_b20229 0.50 +0.7
234,309 - SM_b20229 0.50 -2.3
234,338 + SM_b20229 0.53 +0.3
234,339 - SM_b20229 0.53 -0.4
234,593 - SM_b20229 0.79 +0.0
235,069 + -0.3
235,070 - +0.6
235,130 + -0.3
235,130 + -0.3
235,131 - -0.3
235,164 + SM_b20230 0.13 +0.6
235,165 - SM_b20230 0.13 +0.8
235,168 + SM_b20230 0.14 +1.8
235,252 - SM_b20230 0.22 +1.1
235,264 + SM_b20230 0.23 -0.2
235,306 + SM_b20230 0.27 -0.8
235,307 - SM_b20230 0.27 +0.7
235,307 - SM_b20230 0.27 +0.4
235,352 + SM_b20230 0.32 -1.2
235,376 - SM_b20230 0.34 +0.1
235,376 - SM_b20230 0.34 -0.1
235,450 + SM_b20230 0.42 +0.7
235,450 + SM_b20230 0.42 +0.9
235,450 + SM_b20230 0.42 +0.8
235,451 - SM_b20230 0.42 +0.4
235,451 - SM_b20230 0.42 +0.5
235,531 - SM_b20230 0.50 +0.3
235,545 + SM_b20230 0.51 +0.2
235,692 + SM_b20230 0.66 +0.1
235,692 + SM_b20230 0.66 +2.2
235,692 + SM_b20230 0.66 +0.7
235,693 - SM_b20230 0.66 +0.4
235,693 - SM_b20230 0.66 -0.3
235,693 - SM_b20230 0.66 +0.5
235,698 - SM_b20230 0.66 -0.0
235,754 - SM_b20230 0.72 +0.9
235,754 - SM_b20230 0.72 -0.5
235,881 + SM_b20230 0.84 -0.9
236,074 - +0.7
236,199 - +0.1
236,255 + SM_b20231 0.12 -0.8
236,256 - SM_b20231 0.12 +0.2
236,369 + SM_b20231 0.20 -0.3
236,370 - SM_b20231 0.20 +0.1
236,370 - SM_b20231 0.20 +0.5
236,371 + SM_b20231 0.20 -0.9
236,371 + SM_b20231 0.20 +1.5
236,424 + SM_b20231 0.24 +0.1
236,424 + SM_b20231 0.24 -1.1
236,425 - SM_b20231 0.24 -0.7
236,425 - SM_b20231 0.24 +0.1
236,425 - SM_b20231 0.24 -0.4
236,425 - SM_b20231 0.24 +0.1
236,456 + SM_b20231 0.27 -0.7
236,459 + SM_b20231 0.27 -0.3
236,459 + SM_b20231 0.27 +0.2
236,459 + SM_b20231 0.27 +0.5
236,459 + SM_b20231 0.27 +1.2
236,459 + SM_b20231 0.27 +0.1
236,459 + SM_b20231 0.27 +0.3
236,459 + SM_b20231 0.27 +0.3
236,460 - SM_b20231 0.27 -0.2
236,461 + SM_b20231 0.27 -0.8
236,461 + SM_b20231 0.27 -0.3
236,600 + SM_b20231 0.37 -1.2
236,601 - SM_b20231 0.37 +1.1
236,738 + SM_b20231 0.47 +0.8
236,939 + SM_b20231 0.62 +0.0

Or see this region's nucleotide sequence