Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20216 and SM_b20217 are separated by 217 nucleotides SM_b20217 and SM_b20218 are separated by 170 nucleotides
SM_b20216: SM_b20216 - epoxide hydrolase, at 224,114 to 225,160
_b20216
SM_b20217: SM_b20217 - hypothetical protein, at 225,378 to 226,043
_b20217
SM_b20218: SM_b20218 - sensor histidine kinase, at 226,214 to 227,578
_b20218
Position (kb) 225
226
227 Strain fitness (log2 ratio) -1
0
1
2 at 224.384 kb on + strand, within SM_b20216 at 224.385 kb on - strand, within SM_b20216 at 224.596 kb on + strand, within SM_b20216 at 224.651 kb on + strand, within SM_b20216 at 224.757 kb on - strand, within SM_b20216 at 224.933 kb on + strand, within SM_b20216 at 225.259 kb on + strand at 225.259 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.277 kb on + strand at 225.278 kb on - strand at 225.419 kb on + strand at 225.419 kb on + strand at 225.435 kb on - strand at 225.545 kb on + strand, within SM_b20217 at 225.624 kb on + strand, within SM_b20217 at 225.694 kb on + strand, within SM_b20217 at 225.735 kb on + strand, within SM_b20217 at 225.736 kb on - strand, within SM_b20217 at 225.787 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 225.796 kb on - strand, within SM_b20217 at 226.002 kb on + strand at 226.142 kb on - strand at 226.470 kb on - strand, within SM_b20218 at 226.470 kb on - strand, within SM_b20218 at 226.676 kb on + strand, within SM_b20218 at 226.885 kb on - strand, within SM_b20218
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 224,384 + SM_b20216 0.26 +1.7 224,385 - SM_b20216 0.26 +0.3 224,596 + SM_b20216 0.46 -1.1 224,651 + SM_b20216 0.51 +1.2 224,757 - SM_b20216 0.61 +0.1 224,933 + SM_b20216 0.78 -0.4 225,259 + -0.3 225,259 + +0.0 225,277 + +0.5 225,277 + +2.4 225,277 + +0.3 225,277 + -0.2 225,277 + -0.5 225,278 - -1.7 225,419 + -0.0 225,419 + -0.3 225,435 - +0.1 225,545 + SM_b20217 0.25 -0.3 225,624 + SM_b20217 0.37 -0.8 225,694 + SM_b20217 0.47 +0.0 225,735 + SM_b20217 0.54 -1.0 225,736 - SM_b20217 0.54 -1.5 225,787 - SM_b20217 0.61 +0.1 225,796 - SM_b20217 0.63 -0.7 225,796 - SM_b20217 0.63 -1.3 226,002 + +0.0 226,142 - +0.2 226,470 - SM_b20218 0.19 -0.3 226,470 - SM_b20218 0.19 +1.2 226,676 + SM_b20218 0.34 +0.9 226,885 - SM_b20218 0.49 +0.2
Or see this region's nucleotide sequence