Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20214 and SM_b20215 are separated by 62 nucleotides SM_b20215 and SM_b20216 are separated by 140 nucleotides
SM_b20214: SM_b20214 - oxidoreductase, at 222,127 to 222,930
_b20214
SM_b20215: SM_b20215 - transcriptional regulator, at 222,993 to 223,973
_b20215
SM_b20216: SM_b20216 - epoxide hydrolase, at 224,114 to 225,160
_b20216
Position (kb) 222
223
224 Strain fitness (log2 ratio) -2
-1
0
1
2 at 222.034 kb on + strand at 222.091 kb on - strand at 222.191 kb on - strand at 222.276 kb on + strand, within SM_b20214 at 222.359 kb on + strand, within SM_b20214 at 222.360 kb on - strand, within SM_b20214 at 222.493 kb on + strand, within SM_b20214 at 222.494 kb on - strand, within SM_b20214 at 222.516 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.544 kb on - strand, within SM_b20214 at 222.589 kb on + strand, within SM_b20214 at 222.666 kb on - strand, within SM_b20214 at 222.666 kb on - strand, within SM_b20214 at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.850 kb on + strand at 222.851 kb on - strand at 222.928 kb on + strand at 222.928 kb on + strand at 222.941 kb on - strand at 223.032 kb on - strand at 223.032 kb on - strand at 223.084 kb on + strand at 223.129 kb on - strand, within SM_b20215 at 223.135 kb on + strand, within SM_b20215 at 223.136 kb on - strand, within SM_b20215 at 223.193 kb on + strand, within SM_b20215 at 223.194 kb on - strand, within SM_b20215 at 223.218 kb on + strand, within SM_b20215 at 223.430 kb on + strand, within SM_b20215 at 223.534 kb on - strand, within SM_b20215 at 223.666 kb on - strand, within SM_b20215 at 223.994 kb on + strand at 223.999 kb on + strand at 223.999 kb on + strand at 224.000 kb on - strand at 224.023 kb on + strand at 224.066 kb on + strand at 224.066 kb on + strand at 224.067 kb on - strand at 224.260 kb on + strand, within SM_b20216 at 224.260 kb on + strand, within SM_b20216 at 224.277 kb on + strand, within SM_b20216 at 224.307 kb on + strand, within SM_b20216 at 224.307 kb on + strand, within SM_b20216 at 224.307 kb on + strand, within SM_b20216 at 224.307 kb on + strand, within SM_b20216 at 224.308 kb on - strand, within SM_b20216 at 224.384 kb on + strand, within SM_b20216 at 224.385 kb on - strand, within SM_b20216 at 224.596 kb on + strand, within SM_b20216 at 224.651 kb on + strand, within SM_b20216 at 224.757 kb on - strand, within SM_b20216 at 224.933 kb on + strand, within SM_b20216
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 222,034 + -0.8 222,091 - +1.8 222,191 - +0.1 222,276 + SM_b20214 0.19 -1.1 222,359 + SM_b20214 0.29 -0.8 222,360 - SM_b20214 0.29 -0.1 222,493 + SM_b20214 0.46 -0.2 222,494 - SM_b20214 0.46 +0.5 222,516 - SM_b20214 0.48 -0.3 222,544 - SM_b20214 0.52 +0.3 222,544 - SM_b20214 0.52 -1.4 222,544 - SM_b20214 0.52 -0.5 222,589 + SM_b20214 0.57 -0.3 222,666 - SM_b20214 0.67 +1.1 222,666 - SM_b20214 0.67 +0.0 222,850 + -0.0 222,850 + -0.1 222,850 + -0.2 222,850 + +0.1 222,850 + +2.2 222,851 - -0.6 222,928 + +0.4 222,928 + -1.1 222,941 - +0.1 223,032 - -0.1 223,032 - -1.2 223,084 + +0.3 223,129 - SM_b20215 0.14 +0.1 223,135 + SM_b20215 0.14 -1.4 223,136 - SM_b20215 0.15 -1.5 223,193 + SM_b20215 0.20 -0.4 223,194 - SM_b20215 0.20 -0.6 223,218 + SM_b20215 0.23 -2.4 223,430 + SM_b20215 0.45 -0.6 223,534 - SM_b20215 0.55 -1.3 223,666 - SM_b20215 0.69 -0.1 223,994 + +0.4 223,999 + -0.3 223,999 + +0.5 224,000 - +0.4 224,023 + -0.5 224,066 + +0.2 224,066 + +0.9 224,067 - +0.2 224,260 + SM_b20216 0.14 -0.1 224,260 + SM_b20216 0.14 +0.5 224,277 + SM_b20216 0.16 -0.1 224,307 + SM_b20216 0.18 +1.2 224,307 + SM_b20216 0.18 -0.7 224,307 + SM_b20216 0.18 +0.1 224,307 + SM_b20216 0.18 +0.5 224,308 - SM_b20216 0.19 +0.6 224,384 + SM_b20216 0.26 +1.7 224,385 - SM_b20216 0.26 +0.3 224,596 + SM_b20216 0.46 -1.1 224,651 + SM_b20216 0.51 +1.2 224,757 - SM_b20216 0.61 +0.1 224,933 + SM_b20216 0.78 -0.4
Or see this region's nucleotide sequence