Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20156

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20155 and SM_b20156 overlap by 1 nucleotidesSM_b20156 and SM_b20157 are separated by 41 nucleotides SM_b20155: SM_b20155 - ABC transporter permease, at 172,249 to 174,099 _b20155 SM_b20156: SM_b20156 - ABC transporter ATP-binding protein, at 174,099 to 175,232 _b20156 SM_b20157: SM_b20157 - ABC transporter substrate-binding protein, at 175,274 to 176,398 _b20157 Position (kb) 174 175 176Strain fitness (log2 ratio) -1 0 1 2at 173.157 kb on - strand, within SM_b20155at 173.395 kb on + strand, within SM_b20155at 173.507 kb on + strand, within SM_b20155at 173.539 kb on + strand, within SM_b20155at 173.605 kb on + strand, within SM_b20155at 173.606 kb on - strand, within SM_b20155at 173.639 kb on - strand, within SM_b20155at 173.639 kb on - strand, within SM_b20155at 173.639 kb on - strand, within SM_b20155at 173.684 kb on - strand, within SM_b20155at 173.915 kb on + strandat 173.915 kb on + strandat 173.915 kb on + strandat 173.959 kb on + strandat 173.960 kb on - strandat 173.980 kb on + strandat 173.981 kb on - strandat 174.035 kb on - strandat 174.136 kb on - strandat 174.136 kb on - strandat 174.136 kb on - strandat 174.372 kb on + strand, within SM_b20156at 174.372 kb on + strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.373 kb on - strand, within SM_b20156at 174.658 kb on + strand, within SM_b20156at 174.659 kb on - strand, within SM_b20156at 174.662 kb on + strand, within SM_b20156at 174.662 kb on + strand, within SM_b20156at 174.663 kb on - strand, within SM_b20156at 174.663 kb on - strand, within SM_b20156at 174.666 kb on + strand, within SM_b20156at 174.786 kb on + strand, within SM_b20156at 174.786 kb on + strand, within SM_b20156at 174.787 kb on - strand, within SM_b20156at 174.787 kb on - strand, within SM_b20156at 174.787 kb on - strand, within SM_b20156at 174.844 kb on + strandat 174.844 kb on + strand, within SM_b20156at 174.844 kb on + strand, within SM_b20156at 174.845 kb on - strand, within SM_b20156at 174.845 kb on - strand, within SM_b20156at 174.845 kb on - strand, within SM_b20156at 174.845 kb on - strand, within SM_b20156at 174.898 kb on - strand, within SM_b20156at 174.966 kb on + strand, within SM_b20156at 175.169 kb on - strandat 175.219 kb on + strandat 175.224 kb on + strandat 175.225 kb on - strandat 175.273 kb on + strandat 175.274 kb on - strandat 175.328 kb on + strandat 175.329 kb on - strandat 175.418 kb on + strand, within SM_b20157at 175.419 kb on - strand, within SM_b20157at 175.470 kb on - strand, within SM_b20157at 175.712 kb on + strand, within SM_b20157at 175.713 kb on - strand, within SM_b20157at 175.717 kb on + strand, within SM_b20157at 175.750 kb on + strand, within SM_b20157at 175.751 kb on - strand, within SM_b20157at 175.820 kb on + strand, within SM_b20157at 175.820 kb on + strand, within SM_b20157at 175.820 kb on + strand, within SM_b20157at 175.820 kb on + strand, within SM_b20157at 175.821 kb on - strand, within SM_b20157at 175.821 kb on - strand, within SM_b20157at 175.877 kb on + strand, within SM_b20157at 175.889 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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173,157 - SM_b20155 0.49 -0.7
173,395 + SM_b20155 0.62 +0.5
173,507 + SM_b20155 0.68 -0.2
173,539 + SM_b20155 0.70 -0.8
173,605 + SM_b20155 0.73 +1.3
173,606 - SM_b20155 0.73 +1.0
173,639 - SM_b20155 0.75 +1.0
173,639 - SM_b20155 0.75 -0.2
173,639 - SM_b20155 0.75 +0.5
173,684 - SM_b20155 0.78 +0.8
173,915 + -0.6
173,915 + +0.0
173,915 + -0.3
173,959 + -1.1
173,960 - -0.3
173,980 + -1.3
173,981 - -0.7
174,035 - +0.0
174,136 - -0.5
174,136 - +0.3
174,136 - +0.1
174,372 + SM_b20156 0.24 -1.3
174,372 + SM_b20156 0.24 +1.3
174,373 - SM_b20156 0.24 -0.0
174,373 - SM_b20156 0.24 +0.1
174,373 - SM_b20156 0.24 -1.2
174,373 - SM_b20156 0.24 +1.7
174,373 - SM_b20156 0.24 +1.1
174,658 + SM_b20156 0.49 +1.4
174,659 - SM_b20156 0.49 -0.2
174,662 + SM_b20156 0.50 -0.6
174,662 + SM_b20156 0.50 +0.3
174,663 - SM_b20156 0.50 -0.1
174,663 - SM_b20156 0.50 +0.6
174,666 + SM_b20156 0.50 +0.0
174,786 + SM_b20156 0.61 -0.7
174,786 + SM_b20156 0.61 +0.9
174,787 - SM_b20156 0.61 +0.2
174,787 - SM_b20156 0.61 +0.9
174,787 - SM_b20156 0.61 -0.3
174,844 + +2.3
174,844 + SM_b20156 0.66 +0.0
174,844 + SM_b20156 0.66 -0.1
174,845 - SM_b20156 0.66 +0.5
174,845 - SM_b20156 0.66 -0.1
174,845 - SM_b20156 0.66 +0.5
174,845 - SM_b20156 0.66 -1.6
174,898 - SM_b20156 0.70 +1.0
174,966 + SM_b20156 0.76 -0.1
175,169 - +0.8
175,219 + -1.1
175,224 + +0.4
175,225 - +0.7
175,273 + +0.5
175,274 - -0.0
175,328 + -0.8
175,329 - +1.7
175,418 + SM_b20157 0.13 -0.1
175,419 - SM_b20157 0.13 -0.7
175,470 - SM_b20157 0.17 +0.3
175,712 + SM_b20157 0.39 +0.8
175,713 - SM_b20157 0.39 -0.1
175,717 + SM_b20157 0.39 -0.7
175,750 + SM_b20157 0.42 -1.3
175,751 - SM_b20157 0.42 +0.9
175,820 + SM_b20157 0.49 -0.1
175,820 + SM_b20157 0.49 -0.8
175,820 + SM_b20157 0.49 -0.1
175,820 + SM_b20157 0.49 -1.4
175,821 - SM_b20157 0.49 -0.2
175,821 - SM_b20157 0.49 -0.0
175,877 + SM_b20157 0.54 -0.8
175,889 + -0.1

Or see this region's nucleotide sequence