Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20144 and SM_b20145 are separated by 314 nucleotides SM_b20145 and SM_b20146 overlap by 1 nucleotides SM_b20146 and SM_b20147 overlap by 4 nucleotides
SM_b20144: SM_b20144 - ABC transporter oligopeptide-binding protein, at 158,386 to 159,891
_b20144
SM_b20145: SM_b20145 - hypothetical protein, at 160,206 to 161,393
_b20145
SM_b20146: SM_b20146 - pyridoxal phosphate biosynthetic protein, at 161,393 to 162,358
_b20146
SM_b20147: SM_b20147 - alcohol dehydrogenase, at 162,355 to 163,461
_b20147
Position (kb) 160
161
162 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 159.344 kb on + strand, within SM_b20144 at 159.345 kb on - strand, within SM_b20144 at 159.345 kb on - strand, within SM_b20144 at 159.460 kb on + strand, within SM_b20144 at 159.509 kb on + strand, within SM_b20144 at 159.561 kb on - strand, within SM_b20144 at 159.954 kb on + strand at 159.954 kb on + strand at 159.955 kb on - strand at 159.955 kb on - strand at 160.627 kb on - strand, within SM_b20145 at 160.652 kb on + strand, within SM_b20145 at 160.652 kb on + strand, within SM_b20145 at 160.903 kb on - strand, within SM_b20145 at 160.903 kb on - strand, within SM_b20145 at 161.278 kb on - strand at 161.322 kb on + strand at 161.322 kb on + strand at 161.323 kb on - strand at 161.328 kb on + strand at 161.350 kb on - strand at 161.350 kb on - strand at 161.500 kb on + strand, within SM_b20146 at 161.505 kb on - strand, within SM_b20146 at 161.505 kb on - strand, within SM_b20146 at 161.570 kb on + strand, within SM_b20146 at 161.570 kb on + strand, within SM_b20146 at 161.585 kb on - strand, within SM_b20146 at 161.735 kb on - strand, within SM_b20146 at 161.801 kb on + strand, within SM_b20146 at 161.801 kb on + strand, within SM_b20146 at 161.802 kb on - strand, within SM_b20146 at 161.803 kb on + strand, within SM_b20146 at 161.804 kb on - strand, within SM_b20146 at 161.804 kb on - strand, within SM_b20146 at 162.110 kb on + strand at 162.110 kb on + strand, within SM_b20146 at 162.144 kb on - strand, within SM_b20146 at 162.201 kb on + strand, within SM_b20146 at 162.202 kb on - strand, within SM_b20146 at 162.271 kb on + strand at 162.308 kb on + strand at 162.309 kb on - strand at 162.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 159,344 + SM_b20144 0.64 -0.5 159,345 - SM_b20144 0.64 -0.2 159,345 - SM_b20144 0.64 -0.1 159,460 + SM_b20144 0.71 +0.1 159,509 + SM_b20144 0.75 -0.2 159,561 - SM_b20144 0.78 -0.8 159,954 + +0.2 159,954 + +0.3 159,955 - -0.5 159,955 - -1.2 160,627 - SM_b20145 0.35 +1.6 160,652 + SM_b20145 0.38 -0.2 160,652 + SM_b20145 0.38 -0.2 160,903 - SM_b20145 0.59 +0.7 160,903 - SM_b20145 0.59 +1.6 161,278 - -0.5 161,322 + -0.3 161,322 + +0.0 161,323 - +0.5 161,328 + +0.6 161,350 - -1.4 161,350 - +1.7 161,500 + SM_b20146 0.11 +0.1 161,505 - SM_b20146 0.12 +3.0 161,505 - SM_b20146 0.12 +2.2 161,570 + SM_b20146 0.18 -0.1 161,570 + SM_b20146 0.18 -1.6 161,585 - SM_b20146 0.20 +2.2 161,735 - SM_b20146 0.35 +4.3 161,801 + SM_b20146 0.42 +0.4 161,801 + SM_b20146 0.42 +0.1 161,802 - SM_b20146 0.42 +3.1 161,803 + SM_b20146 0.42 -0.8 161,804 - SM_b20146 0.43 +2.1 161,804 - SM_b20146 0.43 +2.8 162,110 + -0.1 162,110 + SM_b20146 0.74 -0.0 162,144 - SM_b20146 0.78 +2.9 162,201 + SM_b20146 0.84 -0.3 162,202 - SM_b20146 0.84 +2.3 162,271 + -0.6 162,308 + -0.1 162,309 - +0.3 162,360 + +0.0
Or see this region's nucleotide sequence