Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20040 and SM_b20041 are separated by 190 nucleotides SM_b20041 and SM_b20042 are separated by 22 nucleotides
SM_b20040: SM_b20040 - hypothetical protein, at 50,652 to 51,512
_b20040
SM_b20041: SM_b20041 - hypothetical protein, at 51,703 to 52,233
_b20041
SM_b20042: SM_b20042 - hypothetical protein, at 52,256 to 53,413
_b20042
Position (kb) 51
52
53 Strain fitness (log2 ratio) -2
-1
0
1 at 50.753 kb on + strand, within SM_b20040 at 50.754 kb on - strand, within SM_b20040 at 50.898 kb on - strand, within SM_b20040 at 51.136 kb on + strand, within SM_b20040 at 51.696 kb on + strand at 51.696 kb on + strand at 51.696 kb on + strand at 51.697 kb on - strand at 51.720 kb on - strand at 51.770 kb on + strand, within SM_b20041 at 51.925 kb on - strand, within SM_b20041 at 52.002 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.012 kb on + strand, within SM_b20041 at 52.013 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.165 kb on - strand, within SM_b20041 at 52.606 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 52.700 kb on - strand, within SM_b20042 at 53.213 kb on + strand, within SM_b20042
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 50,753 + SM_b20040 0.12 -0.2 50,754 - SM_b20040 0.12 -0.4 50,898 - SM_b20040 0.29 -0.5 51,136 + SM_b20040 0.56 -0.1 51,696 + +0.0 51,696 + -2.3 51,696 + -0.0 51,697 - +0.2 51,720 - -0.4 51,770 + SM_b20041 0.13 +0.1 51,925 - SM_b20041 0.42 -1.1 52,002 + SM_b20041 0.56 +0.6 52,012 + SM_b20041 0.58 -0.1 52,012 + SM_b20041 0.58 +0.7 52,012 + SM_b20041 0.58 +0.3 52,013 - SM_b20041 0.58 +1.1 52,165 - SM_b20041 0.87 -1.5 52,165 - SM_b20041 0.87 -0.4 52,606 - SM_b20042 0.30 +0.3 52,700 - SM_b20042 0.38 -1.2 52,700 - SM_b20042 0.38 -0.3 52,700 - SM_b20042 0.38 +0.4 52,700 - SM_b20042 0.38 +0.5 52,700 - SM_b20042 0.38 -1.1 53,213 + SM_b20042 0.83 -1.4
Or see this region's nucleotide sequence