Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20012 and SM_b20013 are separated by 55 nucleotides SM_b20013 and SM_b20014 are separated by 53 nucleotides
SM_b20012: SM_b20012 - hypothetical protein, at 16,480 to 19,023
_b20012
SM_b20013: SM_b20013 - hypothetical protein, at 19,079 to 20,323
_b20013
SM_b20014: SM_b20014 - transcriptional regulator, at 20,377 to 21,378
_b20014
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1 at 18.141 kb on + strand, within SM_b20012 at 18.272 kb on + strand, within SM_b20012 at 18.273 kb on - strand, within SM_b20012 at 18.273 kb on - strand, within SM_b20012 at 18.380 kb on + strand, within SM_b20012 at 18.662 kb on + strand, within SM_b20012 at 18.662 kb on + strand, within SM_b20012 at 18.662 kb on + strand, within SM_b20012 at 18.662 kb on + strand, within SM_b20012 at 18.663 kb on - strand, within SM_b20012 at 18.663 kb on - strand, within SM_b20012 at 18.737 kb on + strand, within SM_b20012 at 18.737 kb on + strand, within SM_b20012 at 18.738 kb on - strand, within SM_b20012 at 18.770 kb on + strand at 19.081 kb on - strand at 19.081 kb on - strand at 19.110 kb on + strand at 19.111 kb on - strand at 19.111 kb on - strand at 19.226 kb on + strand, within SM_b20013 at 19.227 kb on - strand, within SM_b20013 at 19.270 kb on + strand, within SM_b20013 at 19.271 kb on - strand, within SM_b20013 at 19.272 kb on + strand, within SM_b20013 at 19.382 kb on + strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.383 kb on - strand, within SM_b20013 at 19.423 kb on - strand, within SM_b20013 at 19.423 kb on - strand, within SM_b20013 at 19.470 kb on + strand, within SM_b20013 at 19.471 kb on - strand, within SM_b20013 at 19.569 kb on + strand, within SM_b20013 at 19.612 kb on - strand, within SM_b20013 at 19.911 kb on + strand, within SM_b20013 at 19.912 kb on - strand, within SM_b20013 at 20.068 kb on - strand, within SM_b20013 at 20.209 kb on - strand at 20.269 kb on + strand at 20.382 kb on + strand at 20.382 kb on + strand at 20.383 kb on - strand at 20.383 kb on - strand at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.537 kb on + strand, within SM_b20014 at 20.555 kb on + strand, within SM_b20014 at 20.556 kb on - strand, within SM_b20014 at 20.837 kb on - strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.838 kb on + strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 20.839 kb on - strand, within SM_b20014 at 21.150 kb on - strand, within SM_b20014 at 21.237 kb on - strand, within SM_b20014
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 18,141 + SM_b20012 0.65 -0.3 18,272 + SM_b20012 0.70 -0.6 18,273 - SM_b20012 0.70 +0.4 18,273 - SM_b20012 0.70 +0.2 18,380 + SM_b20012 0.75 -0.5 18,662 + SM_b20012 0.86 -0.3 18,662 + SM_b20012 0.86 -0.3 18,662 + SM_b20012 0.86 -0.1 18,662 + SM_b20012 0.86 -0.3 18,663 - SM_b20012 0.86 +0.4 18,663 - SM_b20012 0.86 +0.4 18,737 + SM_b20012 0.89 -0.2 18,737 + SM_b20012 0.89 -0.1 18,738 - SM_b20012 0.89 +0.7 18,770 + -0.6 19,081 - -1.3 19,081 - -0.2 19,110 + +0.7 19,111 - -0.1 19,111 - +0.5 19,226 + SM_b20013 0.12 +0.5 19,227 - SM_b20013 0.12 +0.0 19,270 + SM_b20013 0.15 -0.1 19,271 - SM_b20013 0.15 -1.5 19,272 + SM_b20013 0.16 +0.8 19,382 + SM_b20013 0.24 +0.2 19,383 - SM_b20013 0.24 +0.0 19,383 - SM_b20013 0.24 -0.4 19,383 - SM_b20013 0.24 -0.5 19,383 - SM_b20013 0.24 +0.1 19,423 - SM_b20013 0.28 +0.1 19,423 - SM_b20013 0.28 +0.1 19,470 + SM_b20013 0.31 +0.2 19,471 - SM_b20013 0.31 +0.1 19,569 + SM_b20013 0.39 -0.7 19,612 - SM_b20013 0.43 -0.4 19,911 + SM_b20013 0.67 +0.5 19,912 - SM_b20013 0.67 -0.1 20,068 - SM_b20013 0.79 +0.8 20,209 - -0.0 20,269 + +0.1 20,382 + -0.0 20,382 + -0.1 20,383 - -0.3 20,383 - -0.6 20,537 + SM_b20014 0.16 -0.3 20,537 + SM_b20014 0.16 -0.4 20,537 + SM_b20014 0.16 -0.6 20,537 + SM_b20014 0.16 +0.6 20,555 + SM_b20014 0.18 +0.0 20,556 - SM_b20014 0.18 +1.5 20,837 - SM_b20014 0.46 -0.1 20,838 + SM_b20014 0.46 -0.6 20,838 + SM_b20014 0.46 -0.4 20,839 - SM_b20014 0.46 +0.0 20,839 - SM_b20014 0.46 -0.3 21,150 - SM_b20014 0.77 -0.1 21,237 - SM_b20014 0.86 -0.6
Or see this region's nucleotide sequence