Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24340

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24335 and RR42_RS24340 are separated by 255 nucleotidesRR42_RS24340 and RR42_RS24345 are separated by 137 nucleotides RR42_RS24335: RR42_RS24335 - L-aspartate oxidase, at 787,315 to 788,925 _RS24335 RR42_RS24340: RR42_RS24340 - hypothetical protein, at 789,181 to 790,731 _RS24340 RR42_RS24345: RR42_RS24345 - membrane protein, at 790,869 to 791,981 _RS24345 Position (kb) 789 790 791Strain fitness (log2 ratio) -2 -1 0 1 2 3at 788.196 kb on - strand, within RR42_RS24335at 788.196 kb on - strand, within RR42_RS24335at 788.344 kb on - strand, within RR42_RS24335at 788.409 kb on + strand, within RR42_RS24335at 788.409 kb on + strand, within RR42_RS24335at 788.410 kb on - strand, within RR42_RS24335at 788.410 kb on - strand, within RR42_RS24335at 788.449 kb on + strand, within RR42_RS24335at 788.449 kb on + strand, within RR42_RS24335at 788.450 kb on - strand, within RR42_RS24335at 788.450 kb on - strand, within RR42_RS24335at 788.450 kb on - strand, within RR42_RS24335at 788.590 kb on + strand, within RR42_RS24335at 788.590 kb on + strand, within RR42_RS24335at 788.590 kb on + strand, within RR42_RS24335at 788.591 kb on - strand, within RR42_RS24335at 788.591 kb on - strand, within RR42_RS24335at 788.641 kb on + strand, within RR42_RS24335at 788.642 kb on - strand, within RR42_RS24335at 788.676 kb on + strand, within RR42_RS24335at 788.677 kb on - strand, within RR42_RS24335at 788.678 kb on + strand, within RR42_RS24335at 788.679 kb on - strand, within RR42_RS24335at 788.679 kb on - strand, within RR42_RS24335at 788.679 kb on - strand, within RR42_RS24335at 788.679 kb on - strand, within RR42_RS24335at 788.733 kb on + strand, within RR42_RS24335at 788.734 kb on - strand, within RR42_RS24335at 788.734 kb on - strand, within RR42_RS24335at 788.809 kb on + strandat 788.833 kb on + strandat 788.833 kb on + strandat 788.834 kb on - strandat 788.834 kb on - strandat 788.834 kb on - strandat 788.834 kb on - strandat 788.841 kb on - strandat 788.955 kb on + strandat 788.975 kb on - strandat 789.032 kb on + strandat 789.032 kb on + strandat 789.052 kb on - strandat 789.106 kb on + strandat 789.186 kb on - strandat 789.186 kb on - strandat 789.265 kb on + strandat 789.266 kb on - strandat 789.275 kb on + strandat 789.275 kb on + strandat 789.315 kb on + strandat 789.316 kb on - strandat 789.316 kb on - strandat 789.316 kb on - strandat 789.316 kb on - strandat 789.377 kb on + strand, within RR42_RS24340at 789.377 kb on + strand, within RR42_RS24340at 789.377 kb on + strand, within RR42_RS24340at 789.377 kb on + strand, within RR42_RS24340at 789.378 kb on - strand, within RR42_RS24340at 789.378 kb on - strand, within RR42_RS24340at 789.378 kb on - strand, within RR42_RS24340at 789.378 kb on - strand, within RR42_RS24340at 789.381 kb on + strand, within RR42_RS24340at 789.395 kb on + strand, within RR42_RS24340at 789.396 kb on - strand, within RR42_RS24340at 789.543 kb on + strand, within RR42_RS24340at 789.561 kb on + strand, within RR42_RS24340at 789.567 kb on + strand, within RR42_RS24340at 789.584 kb on - strand, within RR42_RS24340at 789.663 kb on + strand, within RR42_RS24340at 789.665 kb on + strand, within RR42_RS24340at 789.665 kb on + strand, within RR42_RS24340at 789.666 kb on - strand, within RR42_RS24340at 789.736 kb on - strand, within RR42_RS24340at 789.745 kb on + strand, within RR42_RS24340at 789.746 kb on - strand, within RR42_RS24340at 789.746 kb on - strand, within RR42_RS24340at 789.758 kb on + strand, within RR42_RS24340at 789.758 kb on + strand, within RR42_RS24340at 789.759 kb on - strand, within RR42_RS24340at 789.759 kb on - strand, within RR42_RS24340at 789.759 kb on - strand, within RR42_RS24340at 789.759 kb on - strand, within RR42_RS24340at 789.768 kb on + strand, within RR42_RS24340at 789.769 kb on - strand, within RR42_RS24340at 789.769 kb on - strand, within RR42_RS24340at 789.779 kb on + strand, within RR42_RS24340at 789.779 kb on + strand, within RR42_RS24340at 789.780 kb on - strand, within RR42_RS24340at 789.855 kb on - strand, within RR42_RS24340at 789.860 kb on + strand, within RR42_RS24340at 789.861 kb on - strand, within RR42_RS24340at 789.861 kb on - strand, within RR42_RS24340at 789.861 kb on - strand, within RR42_RS24340at 789.891 kb on + strand, within RR42_RS24340at 789.892 kb on - strand, within RR42_RS24340at 789.907 kb on + strand, within RR42_RS24340at 789.907 kb on + strand, within RR42_RS24340at 789.908 kb on - strand, within RR42_RS24340at 789.915 kb on + strand, within RR42_RS24340at 789.946 kb on + strand, within RR42_RS24340at 789.947 kb on - strand, within RR42_RS24340at 789.947 kb on - strand, within RR42_RS24340at 789.985 kb on + strand, within RR42_RS24340at 789.986 kb on - strand, within RR42_RS24340at 790.000 kb on + strand, within RR42_RS24340at 790.023 kb on + strand, within RR42_RS24340at 790.023 kb on + strand, within RR42_RS24340at 790.029 kb on + strand, within RR42_RS24340at 790.029 kb on + strand, within RR42_RS24340at 790.030 kb on - strand, within RR42_RS24340at 790.030 kb on - strand, within RR42_RS24340at 790.030 kb on - strand, within RR42_RS24340at 790.084 kb on + strand, within RR42_RS24340at 790.085 kb on - strand, within RR42_RS24340at 790.123 kb on + strand, within RR42_RS24340at 790.124 kb on - strand, within RR42_RS24340at 790.124 kb on - strand, within RR42_RS24340at 790.136 kb on - strand, within RR42_RS24340at 790.235 kb on + strand, within RR42_RS24340at 790.235 kb on + strand, within RR42_RS24340at 790.236 kb on - strand, within RR42_RS24340at 790.236 kb on - strand, within RR42_RS24340at 790.236 kb on - strand, within RR42_RS24340at 790.236 kb on - strand, within RR42_RS24340at 790.236 kb on - strand, within RR42_RS24340at 790.236 kb on - strand, within RR42_RS24340at 790.236 kb on - strand, within RR42_RS24340at 790.356 kb on + strand, within RR42_RS24340at 790.356 kb on + strand, within RR42_RS24340at 790.419 kb on - strand, within RR42_RS24340at 790.452 kb on - strand, within RR42_RS24340at 790.452 kb on - strand, within RR42_RS24340at 790.452 kb on - strand, within RR42_RS24340at 790.467 kb on - strand, within RR42_RS24340at 790.467 kb on - strand, within RR42_RS24340at 790.467 kb on - strand, within RR42_RS24340at 790.497 kb on - strand, within RR42_RS24340at 790.497 kb on - strand, within RR42_RS24340at 790.671 kb on + strandat 790.725 kb on + strandat 790.740 kb on + strandat 790.754 kb on + strandat 790.754 kb on + strandat 790.754 kb on + strandat 790.755 kb on - strandat 790.755 kb on - strandat 790.829 kb on + strandat 790.837 kb on - strandat 790.842 kb on + strandat 790.866 kb on + strandat 790.934 kb on + strandat 790.935 kb on - strandat 790.935 kb on - strandat 790.935 kb on - strandat 790.937 kb on + strandat 790.940 kb on + strandat 790.941 kb on - strandat 790.941 kb on - strandat 790.948 kb on - strandat 790.948 kb on - strandat 790.974 kb on + strandat 790.975 kb on - strandat 791.128 kb on + strand, within RR42_RS24345at 791.128 kb on + strand, within RR42_RS24345at 791.129 kb on - strand, within RR42_RS24345at 791.129 kb on - strand, within RR42_RS24345at 791.129 kb on - strand, within RR42_RS24345at 791.129 kb on - strand, within RR42_RS24345at 791.129 kb on - strand, within RR42_RS24345at 791.129 kb on - strand, within RR42_RS24345at 791.156 kb on - strand, within RR42_RS24345at 791.210 kb on - strand, within RR42_RS24345at 791.210 kb on - strand, within RR42_RS24345at 791.253 kb on + strand, within RR42_RS24345at 791.310 kb on + strand, within RR42_RS24345at 791.311 kb on - strand, within RR42_RS24345at 791.330 kb on - strand, within RR42_RS24345at 791.339 kb on - strand, within RR42_RS24345at 791.339 kb on - strand, within RR42_RS24345at 791.358 kb on - strand, within RR42_RS24345at 791.465 kb on + strand, within RR42_RS24345at 791.466 kb on - strand, within RR42_RS24345at 791.466 kb on - strand, within RR42_RS24345at 791.468 kb on + strand, within RR42_RS24345at 791.469 kb on - strand, within RR42_RS24345at 791.472 kb on + strand, within RR42_RS24345at 791.473 kb on - strand, within RR42_RS24345at 791.473 kb on - strand, within RR42_RS24345at 791.485 kb on + strand, within RR42_RS24345at 791.521 kb on + strand, within RR42_RS24345at 791.522 kb on - strand, within RR42_RS24345at 791.522 kb on - strand, within RR42_RS24345at 791.535 kb on - strand, within RR42_RS24345at 791.567 kb on + strand, within RR42_RS24345at 791.594 kb on + strand, within RR42_RS24345at 791.595 kb on - strand, within RR42_RS24345at 791.598 kb on + strand, within RR42_RS24345at 791.598 kb on + strand, within RR42_RS24345at 791.599 kb on - strand, within RR42_RS24345at 791.599 kb on - strand, within RR42_RS24345at 791.599 kb on - strand, within RR42_RS24345at 791.667 kb on - strand, within RR42_RS24345at 791.671 kb on + strand, within RR42_RS24345at 791.671 kb on + strand, within RR42_RS24345at 791.672 kb on - strand, within RR42_RS24345at 791.672 kb on - strand, within RR42_RS24345at 791.672 kb on - strand, within RR42_RS24345at 791.686 kb on - strand, within RR42_RS24345at 791.686 kb on - strand, within RR42_RS24345at 791.707 kb on - strand, within RR42_RS24345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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788,196 - RR42_RS24335 0.55 -0.1
788,196 - RR42_RS24335 0.55 +0.7
788,344 - RR42_RS24335 0.64 -0.5
788,409 + RR42_RS24335 0.68 -1.3
788,409 + RR42_RS24335 0.68 -1.2
788,410 - RR42_RS24335 0.68 +0.1
788,410 - RR42_RS24335 0.68 +0.1
788,449 + RR42_RS24335 0.70 -0.1
788,449 + RR42_RS24335 0.70 -0.7
788,450 - RR42_RS24335 0.70 +0.7
788,450 - RR42_RS24335 0.70 +0.0
788,450 - RR42_RS24335 0.70 -0.3
788,590 + RR42_RS24335 0.79 -0.5
788,590 + RR42_RS24335 0.79 +0.5
788,590 + RR42_RS24335 0.79 -1.0
788,591 - RR42_RS24335 0.79 -0.3
788,591 - RR42_RS24335 0.79 -0.1
788,641 + RR42_RS24335 0.82 -0.5
788,642 - RR42_RS24335 0.82 +0.6
788,676 + RR42_RS24335 0.84 +0.1
788,677 - RR42_RS24335 0.85 +0.1
788,678 + RR42_RS24335 0.85 -0.4
788,679 - RR42_RS24335 0.85 -0.7
788,679 - RR42_RS24335 0.85 -0.1
788,679 - RR42_RS24335 0.85 +1.9
788,679 - RR42_RS24335 0.85 +2.6
788,733 + RR42_RS24335 0.88 -0.1
788,734 - RR42_RS24335 0.88 -1.0
788,734 - RR42_RS24335 0.88 +0.3
788,809 + -0.6
788,833 + -0.7
788,833 + +1.9
788,834 - -0.4
788,834 - -0.3
788,834 - +1.4
788,834 - +0.2
788,841 - +0.7
788,955 + -1.2
788,975 - -0.5
789,032 + +0.0
789,032 + +0.3
789,052 - +0.2
789,106 + +1.2
789,186 - +1.6
789,186 - -0.1
789,265 + -0.9
789,266 - +0.3
789,275 + -0.3
789,275 + -0.6
789,315 + -0.5
789,316 - -1.2
789,316 - -0.7
789,316 - -1.1
789,316 - -0.1
789,377 + RR42_RS24340 0.13 -0.0
789,377 + RR42_RS24340 0.13 -0.1
789,377 + RR42_RS24340 0.13 -0.5
789,377 + RR42_RS24340 0.13 +0.3
789,378 - RR42_RS24340 0.13 +0.7
789,378 - RR42_RS24340 0.13 -0.0
789,378 - RR42_RS24340 0.13 +2.6
789,378 - RR42_RS24340 0.13 +0.9
789,381 + RR42_RS24340 0.13 +0.9
789,395 + RR42_RS24340 0.14 -0.4
789,396 - RR42_RS24340 0.14 -1.2
789,543 + RR42_RS24340 0.23 -0.3
789,561 + RR42_RS24340 0.25 +0.2
789,567 + RR42_RS24340 0.25 -0.1
789,584 - RR42_RS24340 0.26 +0.1
789,663 + RR42_RS24340 0.31 -0.2
789,665 + RR42_RS24340 0.31 -0.0
789,665 + RR42_RS24340 0.31 +1.8
789,666 - RR42_RS24340 0.31 +0.9
789,736 - RR42_RS24340 0.36 -0.2
789,745 + RR42_RS24340 0.36 +0.6
789,746 - RR42_RS24340 0.36 -1.2
789,746 - RR42_RS24340 0.36 +0.8
789,758 + RR42_RS24340 0.37 +0.5
789,758 + RR42_RS24340 0.37 +0.5
789,759 - RR42_RS24340 0.37 +0.3
789,759 - RR42_RS24340 0.37 +0.6
789,759 - RR42_RS24340 0.37 -0.3
789,759 - RR42_RS24340 0.37 +1.1
789,768 + RR42_RS24340 0.38 +0.3
789,769 - RR42_RS24340 0.38 +1.6
789,769 - RR42_RS24340 0.38 -0.0
789,779 + RR42_RS24340 0.39 +0.9
789,779 + RR42_RS24340 0.39 +1.1
789,780 - RR42_RS24340 0.39 +0.7
789,855 - RR42_RS24340 0.43 +0.0
789,860 + RR42_RS24340 0.44 -0.3
789,861 - RR42_RS24340 0.44 -0.1
789,861 - RR42_RS24340 0.44 -0.8
789,861 - RR42_RS24340 0.44 +0.7
789,891 + RR42_RS24340 0.46 +0.1
789,892 - RR42_RS24340 0.46 -1.0
789,907 + RR42_RS24340 0.47 +2.3
789,907 + RR42_RS24340 0.47 -0.8
789,908 - RR42_RS24340 0.47 -0.5
789,915 + RR42_RS24340 0.47 +1.0
789,946 + RR42_RS24340 0.49 +0.1
789,947 - RR42_RS24340 0.49 -1.1
789,947 - RR42_RS24340 0.49 +0.1
789,985 + RR42_RS24340 0.52 -1.1
789,986 - RR42_RS24340 0.52 +0.6
790,000 + RR42_RS24340 0.53 -1.0
790,023 + RR42_RS24340 0.54 +0.9
790,023 + RR42_RS24340 0.54 -0.4
790,029 + RR42_RS24340 0.55 +0.4
790,029 + RR42_RS24340 0.55 +0.3
790,030 - RR42_RS24340 0.55 -0.4
790,030 - RR42_RS24340 0.55 +0.7
790,030 - RR42_RS24340 0.55 +0.2
790,084 + RR42_RS24340 0.58 +0.2
790,085 - RR42_RS24340 0.58 +0.1
790,123 + RR42_RS24340 0.61 +0.1
790,124 - RR42_RS24340 0.61 -1.9
790,124 - RR42_RS24340 0.61 +0.2
790,136 - RR42_RS24340 0.62 -1.4
790,235 + RR42_RS24340 0.68 -0.3
790,235 + RR42_RS24340 0.68 +0.2
790,236 - RR42_RS24340 0.68 +0.1
790,236 - RR42_RS24340 0.68 +0.6
790,236 - RR42_RS24340 0.68 +0.4
790,236 - RR42_RS24340 0.68 +3.2
790,236 - RR42_RS24340 0.68 +0.2
790,236 - RR42_RS24340 0.68 +1.1
790,236 - RR42_RS24340 0.68 -0.6
790,356 + RR42_RS24340 0.76 +0.2
790,356 + RR42_RS24340 0.76 +0.3
790,419 - RR42_RS24340 0.80 +0.3
790,452 - RR42_RS24340 0.82 -0.7
790,452 - RR42_RS24340 0.82 +1.0
790,452 - RR42_RS24340 0.82 -0.1
790,467 - RR42_RS24340 0.83 +0.5
790,467 - RR42_RS24340 0.83 +0.0
790,467 - RR42_RS24340 0.83 -1.4
790,497 - RR42_RS24340 0.85 +1.3
790,497 - RR42_RS24340 0.85 -0.7
790,671 + -0.2
790,725 + +0.4
790,740 + -0.5
790,754 + +0.3
790,754 + -0.2
790,754 + +0.4
790,755 - -0.3
790,755 - +1.7
790,829 + -0.3
790,837 - +0.4
790,842 + +0.3
790,866 + -0.2
790,934 + +1.1
790,935 - -0.7
790,935 - +0.2
790,935 - +0.2
790,937 + +0.1
790,940 + -0.2
790,941 - -0.3
790,941 - +0.7
790,948 - -0.7
790,948 - -0.5
790,974 + -0.1
790,975 - +1.2
791,128 + RR42_RS24345 0.23 +0.2
791,128 + RR42_RS24345 0.23 -0.1
791,129 - RR42_RS24345 0.23 +0.4
791,129 - RR42_RS24345 0.23 -0.6
791,129 - RR42_RS24345 0.23 -2.7
791,129 - RR42_RS24345 0.23 +0.4
791,129 - RR42_RS24345 0.23 -0.4
791,129 - RR42_RS24345 0.23 -0.4
791,156 - RR42_RS24345 0.26 -0.0
791,210 - RR42_RS24345 0.31 -0.3
791,210 - RR42_RS24345 0.31 -0.6
791,253 + RR42_RS24345 0.35 +0.2
791,310 + RR42_RS24345 0.40 +0.3
791,311 - RR42_RS24345 0.40 -0.7
791,330 - RR42_RS24345 0.41 -1.4
791,339 - RR42_RS24345 0.42 +1.0
791,339 - RR42_RS24345 0.42 -0.2
791,358 - RR42_RS24345 0.44 -0.2
791,465 + RR42_RS24345 0.54 -0.4
791,466 - RR42_RS24345 0.54 +0.1
791,466 - RR42_RS24345 0.54 +1.4
791,468 + RR42_RS24345 0.54 -0.9
791,469 - RR42_RS24345 0.54 +0.4
791,472 + RR42_RS24345 0.54 -1.2
791,473 - RR42_RS24345 0.54 -0.4
791,473 - RR42_RS24345 0.54 -0.1
791,485 + RR42_RS24345 0.55 +1.5
791,521 + RR42_RS24345 0.59 +0.4
791,522 - RR42_RS24345 0.59 +0.1
791,522 - RR42_RS24345 0.59 -0.2
791,535 - RR42_RS24345 0.60 +0.6
791,567 + RR42_RS24345 0.63 -0.4
791,594 + RR42_RS24345 0.65 -0.3
791,595 - RR42_RS24345 0.65 +0.9
791,598 + RR42_RS24345 0.65 +0.1
791,598 + RR42_RS24345 0.65 -0.4
791,599 - RR42_RS24345 0.66 -0.3
791,599 - RR42_RS24345 0.66 +0.5
791,599 - RR42_RS24345 0.66 -0.2
791,667 - RR42_RS24345 0.72 -0.2
791,671 + RR42_RS24345 0.72 -0.5
791,671 + RR42_RS24345 0.72 -0.1
791,672 - RR42_RS24345 0.72 +0.7
791,672 - RR42_RS24345 0.72 +0.0
791,672 - RR42_RS24345 0.72 +0.1
791,686 - RR42_RS24345 0.73 -0.9
791,686 - RR42_RS24345 0.73 +0.3
791,707 - RR42_RS24345 0.75 -0.7

Or see this region's nucleotide sequence