Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24050

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24045 and RR42_RS24050 are separated by 43 nucleotidesRR42_RS24050 and RR42_RS24055 are separated by 199 nucleotides RR42_RS24045: RR42_RS24045 - gentisate 1,2-dioxygenase, at 718,500 to 719,561 _RS24045 RR42_RS24050: RR42_RS24050 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 719,605 to 721,257 _RS24050 RR42_RS24055: RR42_RS24055 - hypothetical protein, at 721,457 to 722,527 _RS24055 Position (kb) 719 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2 3at 718.686 kb on - strand, within RR42_RS24045at 718.899 kb on + strand, within RR42_RS24045at 718.900 kb on - strand, within RR42_RS24045at 718.900 kb on - strand, within RR42_RS24045at 719.031 kb on + strand, within RR42_RS24045at 719.043 kb on + strand, within RR42_RS24045at 719.044 kb on - strand, within RR42_RS24045at 719.089 kb on - strand, within RR42_RS24045at 719.231 kb on + strand, within RR42_RS24045at 719.232 kb on - strand, within RR42_RS24045at 719.232 kb on - strand, within RR42_RS24045at 719.244 kb on + strand, within RR42_RS24045at 719.245 kb on - strand, within RR42_RS24045at 719.358 kb on + strand, within RR42_RS24045at 719.358 kb on + strand, within RR42_RS24045at 719.358 kb on + strand, within RR42_RS24045at 719.358 kb on + strand, within RR42_RS24045at 719.359 kb on - strand, within RR42_RS24045at 719.359 kb on - strand, within RR42_RS24045at 719.363 kb on - strand, within RR42_RS24045at 719.363 kb on - strand, within RR42_RS24045at 719.465 kb on + strandat 719.465 kb on + strandat 719.465 kb on + strandat 719.465 kb on + strandat 719.466 kb on - strandat 719.466 kb on - strandat 719.466 kb on - strandat 719.505 kb on - strandat 719.524 kb on + strandat 719.592 kb on + strandat 719.593 kb on - strandat 719.593 kb on - strandat 719.593 kb on - strandat 719.593 kb on - strandat 719.599 kb on - strandat 719.631 kb on + strandat 719.750 kb on + strandat 719.750 kb on + strandat 719.751 kb on - strandat 719.751 kb on - strandat 719.760 kb on + strandat 719.771 kb on - strand, within RR42_RS24050at 719.816 kb on - strand, within RR42_RS24050at 719.816 kb on - strand, within RR42_RS24050at 719.816 kb on - strand, within RR42_RS24050at 720.013 kb on + strand, within RR42_RS24050at 720.014 kb on - strand, within RR42_RS24050at 720.112 kb on + strand, within RR42_RS24050at 720.112 kb on + strand, within RR42_RS24050at 720.113 kb on - strand, within RR42_RS24050at 720.113 kb on - strand, within RR42_RS24050at 720.113 kb on - strand, within RR42_RS24050at 720.193 kb on + strand, within RR42_RS24050at 720.193 kb on + strand, within RR42_RS24050at 720.193 kb on + strand, within RR42_RS24050at 720.262 kb on + strand, within RR42_RS24050at 720.262 kb on + strand, within RR42_RS24050at 720.262 kb on + strand, within RR42_RS24050at 720.263 kb on - strand, within RR42_RS24050at 720.309 kb on + strand, within RR42_RS24050at 720.352 kb on - strand, within RR42_RS24050at 720.352 kb on - strand, within RR42_RS24050at 720.395 kb on + strand, within RR42_RS24050at 720.395 kb on + strand, within RR42_RS24050at 720.475 kb on + strand, within RR42_RS24050at 720.491 kb on + strand, within RR42_RS24050at 720.549 kb on + strand, within RR42_RS24050at 720.550 kb on - strand, within RR42_RS24050at 720.550 kb on - strand, within RR42_RS24050at 720.550 kb on - strand, within RR42_RS24050at 720.616 kb on - strand, within RR42_RS24050at 720.634 kb on + strand, within RR42_RS24050at 720.791 kb on - strand, within RR42_RS24050at 720.841 kb on + strand, within RR42_RS24050at 720.848 kb on - strand, within RR42_RS24050at 720.910 kb on + strand, within RR42_RS24050at 720.910 kb on + strand, within RR42_RS24050at 720.910 kb on + strand, within RR42_RS24050at 720.910 kb on + strand, within RR42_RS24050at 720.911 kb on - strand, within RR42_RS24050at 720.911 kb on - strand, within RR42_RS24050at 721.211 kb on + strandat 721.211 kb on + strandat 721.212 kb on - strandat 721.212 kb on - strandat 721.241 kb on + strandat 721.256 kb on - strandat 721.422 kb on + strandat 721.435 kb on - strandat 721.452 kb on + strandat 721.452 kb on + strandat 721.452 kb on + strandat 721.452 kb on + strandat 721.453 kb on - strandat 721.456 kb on + strandat 721.456 kb on + strandat 721.456 kb on + strandat 721.456 kb on + strandat 721.456 kb on + strandat 721.456 kb on + strandat 721.456 kb on + strandat 721.661 kb on + strand, within RR42_RS24055at 721.661 kb on + strand, within RR42_RS24055at 721.735 kb on - strand, within RR42_RS24055at 721.735 kb on - strand, within RR42_RS24055at 721.735 kb on - strand, within RR42_RS24055at 722.027 kb on + strand, within RR42_RS24055at 722.027 kb on + strand, within RR42_RS24055at 722.028 kb on - strand, within RR42_RS24055at 722.108 kb on + strand, within RR42_RS24055at 722.108 kb on + strand, within RR42_RS24055at 722.109 kb on - strand, within RR42_RS24055at 722.121 kb on + strand, within RR42_RS24055at 722.122 kb on - strand, within RR42_RS24055at 722.122 kb on - strand, within RR42_RS24055at 722.133 kb on - strand, within RR42_RS24055at 722.252 kb on + strand, within RR42_RS24055at 722.252 kb on + strand, within RR42_RS24055

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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718,686 - RR42_RS24045 0.18 -1.9
718,899 + RR42_RS24045 0.38 +2.5
718,900 - RR42_RS24045 0.38 +0.4
718,900 - RR42_RS24045 0.38 +1.2
719,031 + RR42_RS24045 0.50 -0.1
719,043 + RR42_RS24045 0.51 -1.1
719,044 - RR42_RS24045 0.51 +0.4
719,089 - RR42_RS24045 0.55 -0.9
719,231 + RR42_RS24045 0.69 +1.2
719,232 - RR42_RS24045 0.69 +0.0
719,232 - RR42_RS24045 0.69 -0.4
719,244 + RR42_RS24045 0.70 +0.1
719,245 - RR42_RS24045 0.70 +1.1
719,358 + RR42_RS24045 0.81 +0.2
719,358 + RR42_RS24045 0.81 +0.5
719,358 + RR42_RS24045 0.81 +1.3
719,358 + RR42_RS24045 0.81 +0.5
719,359 - RR42_RS24045 0.81 -0.7
719,359 - RR42_RS24045 0.81 +0.8
719,363 - RR42_RS24045 0.81 +0.4
719,363 - RR42_RS24045 0.81 -0.1
719,465 + +0.5
719,465 + +0.4
719,465 + +1.1
719,465 + +0.0
719,466 - -0.1
719,466 - +0.2
719,466 - +0.6
719,505 - -0.1
719,524 + -0.8
719,592 + +0.6
719,593 - +2.5
719,593 - -1.7
719,593 - -0.1
719,593 - -0.0
719,599 - -0.3
719,631 + +0.2
719,750 + +0.9
719,750 + -0.2
719,751 - +0.9
719,751 - +0.3
719,760 + -0.8
719,771 - RR42_RS24050 0.10 +2.0
719,816 - RR42_RS24050 0.13 -0.3
719,816 - RR42_RS24050 0.13 -0.1
719,816 - RR42_RS24050 0.13 +0.0
720,013 + RR42_RS24050 0.25 -0.4
720,014 - RR42_RS24050 0.25 +0.5
720,112 + RR42_RS24050 0.31 -0.8
720,112 + RR42_RS24050 0.31 +0.8
720,113 - RR42_RS24050 0.31 -0.0
720,113 - RR42_RS24050 0.31 +0.8
720,113 - RR42_RS24050 0.31 -0.4
720,193 + RR42_RS24050 0.36 +0.9
720,193 + RR42_RS24050 0.36 -0.7
720,193 + RR42_RS24050 0.36 -0.6
720,262 + RR42_RS24050 0.40 -0.6
720,262 + RR42_RS24050 0.40 +0.4
720,262 + RR42_RS24050 0.40 +0.0
720,263 - RR42_RS24050 0.40 -0.6
720,309 + RR42_RS24050 0.43 -0.1
720,352 - RR42_RS24050 0.45 +0.3
720,352 - RR42_RS24050 0.45 -0.6
720,395 + RR42_RS24050 0.48 +0.2
720,395 + RR42_RS24050 0.48 +0.5
720,475 + RR42_RS24050 0.53 -0.3
720,491 + RR42_RS24050 0.54 +0.3
720,549 + RR42_RS24050 0.57 -0.3
720,550 - RR42_RS24050 0.57 +1.0
720,550 - RR42_RS24050 0.57 +0.1
720,550 - RR42_RS24050 0.57 +0.2
720,616 - RR42_RS24050 0.61 -0.3
720,634 + RR42_RS24050 0.62 -0.4
720,791 - RR42_RS24050 0.72 +0.4
720,841 + RR42_RS24050 0.75 -0.0
720,848 - RR42_RS24050 0.75 -0.5
720,910 + RR42_RS24050 0.79 -1.7
720,910 + RR42_RS24050 0.79 +0.7
720,910 + RR42_RS24050 0.79 +0.7
720,910 + RR42_RS24050 0.79 +0.6
720,911 - RR42_RS24050 0.79 -0.7
720,911 - RR42_RS24050 0.79 +0.4
721,211 + +0.7
721,211 + -0.2
721,212 - +0.5
721,212 - -0.6
721,241 + +0.2
721,256 - +0.5
721,422 + +0.2
721,435 - -0.7
721,452 + -0.2
721,452 + -0.1
721,452 + +0.2
721,452 + -0.3
721,453 - -0.1
721,456 + -0.1
721,456 + -1.1
721,456 + +0.5
721,456 + +1.2
721,456 + -0.0
721,456 + +0.1
721,456 + +0.9
721,661 + RR42_RS24055 0.19 +0.6
721,661 + RR42_RS24055 0.19 +0.6
721,735 - RR42_RS24055 0.26 -1.0
721,735 - RR42_RS24055 0.26 +0.2
721,735 - RR42_RS24055 0.26 +0.3
722,027 + RR42_RS24055 0.53 +0.3
722,027 + RR42_RS24055 0.53 +0.2
722,028 - RR42_RS24055 0.53 -1.3
722,108 + RR42_RS24055 0.61 +0.0
722,108 + RR42_RS24055 0.61 +0.1
722,109 - RR42_RS24055 0.61 -0.2
722,121 + RR42_RS24055 0.62 -0.4
722,122 - RR42_RS24055 0.62 +2.9
722,122 - RR42_RS24055 0.62 +0.3
722,133 - RR42_RS24055 0.63 +0.5
722,252 + RR42_RS24055 0.74 +1.0
722,252 + RR42_RS24055 0.74 -0.9

Or see this region's nucleotide sequence