Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23735 and RR42_RS23740 are separated by 6 nucleotides RR42_RS23740 and RR42_RS23745 are separated by 26 nucleotides RR42_RS23745 and RR42_RS23750 are separated by 66 nucleotides
RR42_RS23735: RR42_RS23735 - phenylacetyl-CoA 1,2-epoxidase, structural subunit (EC 1.14.13.149) <small>(from data)</small>, at 649,875 to 650,675
_RS23735
RR42_RS23740: RR42_RS23740 - phenylacetate-CoA oxygenase, at 650,682 to 651,248
_RS23740
RR42_RS23745: RR42_RS23745 - phenylacetic acid degradation protein, at 651,275 to 652,363
_RS23745
RR42_RS23750: RR42_RS23750 - aldehyde dehydrogenase, at 652,430 to 654,112
_RS23750
Position (kb) 651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2 at 650.410 kb on - strand, within RR42_RS23735 at 650.620 kb on - strand at 650.673 kb on + strand at 650.856 kb on + strand, within RR42_RS23740 at 651.198 kb on + strand at 651.199 kb on - strand at 651.199 kb on - strand at 651.231 kb on + strand at 651.244 kb on - strand at 651.636 kb on - strand, within RR42_RS23745 at 652.136 kb on + strand, within RR42_RS23745 at 652.137 kb on - strand, within RR42_RS23745 at 652.190 kb on + strand, within RR42_RS23745 at 652.190 kb on + strand, within RR42_RS23745 at 652.191 kb on - strand, within RR42_RS23745 at 652.191 kb on - strand, within RR42_RS23745 at 652.349 kb on + strand at 652.502 kb on + strand at 652.899 kb on + strand, within RR42_RS23750 at 652.899 kb on + strand, within RR42_RS23750 at 652.913 kb on + strand, within RR42_RS23750 at 652.914 kb on - strand, within RR42_RS23750 at 652.952 kb on + strand, within RR42_RS23750 at 653.070 kb on - strand, within RR42_RS23750 at 653.348 kb on + strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750 at 653.349 kb on - strand, within RR42_RS23750
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 650,410 - RR42_RS23735 0.67 -0.6 650,620 - +0.2 650,673 + +0.4 650,856 + RR42_RS23740 0.31 +0.9 651,198 + +0.5 651,199 - +2.1 651,199 - -0.5 651,231 + -0.2 651,244 - -0.8 651,636 - RR42_RS23745 0.33 +1.9 652,136 + RR42_RS23745 0.79 -0.7 652,137 - RR42_RS23745 0.79 -1.3 652,190 + RR42_RS23745 0.84 -0.1 652,190 + RR42_RS23745 0.84 -1.6 652,191 - RR42_RS23745 0.84 +0.9 652,191 - RR42_RS23745 0.84 +0.6 652,349 + -1.0 652,502 + -0.6 652,899 + RR42_RS23750 0.28 +0.8 652,899 + RR42_RS23750 0.28 -0.1 652,913 + RR42_RS23750 0.29 +0.1 652,914 - RR42_RS23750 0.29 -0.2 652,952 + RR42_RS23750 0.31 -1.9 653,070 - RR42_RS23750 0.38 +0.1 653,348 + RR42_RS23750 0.55 +0.5 653,349 - RR42_RS23750 0.55 -0.2 653,349 - RR42_RS23750 0.55 -0.3 653,349 - RR42_RS23750 0.55 -0.5
Or see this region's nucleotide sequence