Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23425 and RR42_RS23430 are separated by 21 nucleotides RR42_RS23430 and RR42_RS23435 are separated by 22 nucleotides RR42_RS23435 and RR42_RS23440 are separated by 40 nucleotides
RR42_RS23425: RR42_RS23425 - hypothetical protein, at 582,328 to 583,323
_RS23425
RR42_RS23430: RR42_RS23430 - hypothetical protein, at 583,345 to 584,160
_RS23430
RR42_RS23435: RR42_RS23435 - gluconolactonase, at 584,183 to 585,136
_RS23435
RR42_RS23440: RR42_RS23440 - hypothetical protein, at 585,177 to 586,136
_RS23440
Position (kb) 584
585
586 Strain fitness (log2 ratio) -2
-1
0
1
2 at 583.273 kb on + strand at 583.274 kb on - strand at 583.384 kb on - strand at 583.384 kb on - strand at 583.384 kb on - strand at 583.388 kb on - strand at 583.389 kb on - strand at 583.429 kb on + strand, within RR42_RS23430 at 583.429 kb on + strand, within RR42_RS23430 at 583.460 kb on + strand, within RR42_RS23430 at 583.470 kb on - strand, within RR42_RS23430 at 583.519 kb on + strand, within RR42_RS23430 at 583.519 kb on + strand, within RR42_RS23430 at 583.520 kb on - strand, within RR42_RS23430 at 583.520 kb on - strand, within RR42_RS23430 at 583.520 kb on - strand, within RR42_RS23430 at 583.520 kb on - strand, within RR42_RS23430 at 583.680 kb on + strand, within RR42_RS23430 at 583.732 kb on + strand, within RR42_RS23430 at 583.772 kb on + strand, within RR42_RS23430 at 583.802 kb on - strand, within RR42_RS23430 at 583.820 kb on + strand, within RR42_RS23430 at 583.820 kb on + strand, within RR42_RS23430 at 583.820 kb on + strand, within RR42_RS23430 at 583.907 kb on + strand, within RR42_RS23430 at 583.908 kb on - strand, within RR42_RS23430 at 583.992 kb on - strand, within RR42_RS23430 at 584.050 kb on + strand, within RR42_RS23430 at 584.051 kb on - strand, within RR42_RS23430 at 584.088 kb on - strand at 584.153 kb on - strand at 584.264 kb on + strand at 584.264 kb on + strand at 584.434 kb on + strand, within RR42_RS23435 at 584.520 kb on - strand, within RR42_RS23435 at 584.649 kb on - strand, within RR42_RS23435 at 584.691 kb on - strand, within RR42_RS23435 at 584.708 kb on - strand, within RR42_RS23435 at 584.786 kb on + strand, within RR42_RS23435 at 584.835 kb on + strand, within RR42_RS23435 at 584.836 kb on - strand, within RR42_RS23435 at 585.096 kb on - strand at 585.104 kb on + strand at 585.104 kb on + strand at 585.104 kb on + strand at 585.105 kb on - strand at 585.177 kb on - strand at 585.177 kb on - strand at 585.177 kb on - strand at 585.477 kb on + strand, within RR42_RS23440 at 585.477 kb on + strand, within RR42_RS23440 at 585.478 kb on - strand, within RR42_RS23440 at 585.479 kb on + strand, within RR42_RS23440 at 585.479 kb on + strand, within RR42_RS23440 at 585.479 kb on + strand, within RR42_RS23440 at 585.480 kb on - strand, within RR42_RS23440 at 585.480 kb on - strand, within RR42_RS23440 at 585.492 kb on + strand, within RR42_RS23440 at 585.493 kb on - strand, within RR42_RS23440 at 585.660 kb on - strand, within RR42_RS23440 at 585.714 kb on + strand, within RR42_RS23440 at 585.714 kb on + strand, within RR42_RS23440 at 585.714 kb on + strand, within RR42_RS23440 at 585.714 kb on + strand, within RR42_RS23440 at 585.715 kb on - strand, within RR42_RS23440 at 585.715 kb on - strand, within RR42_RS23440 at 585.855 kb on + strand, within RR42_RS23440 at 585.856 kb on - strand, within RR42_RS23440 at 585.890 kb on + strand, within RR42_RS23440 at 585.890 kb on + strand, within RR42_RS23440 at 585.891 kb on - strand, within RR42_RS23440
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 583,273 + +0.9 583,274 - -0.3 583,384 - +0.1 583,384 - +0.1 583,384 - -0.4 583,388 - +0.9 583,389 - -0.5 583,429 + RR42_RS23430 0.10 +0.5 583,429 + RR42_RS23430 0.10 -0.1 583,460 + RR42_RS23430 0.14 +0.2 583,470 - RR42_RS23430 0.15 -0.5 583,519 + RR42_RS23430 0.21 -0.3 583,519 + RR42_RS23430 0.21 +1.9 583,520 - RR42_RS23430 0.21 +1.2 583,520 - RR42_RS23430 0.21 -0.3 583,520 - RR42_RS23430 0.21 +1.1 583,520 - RR42_RS23430 0.21 +0.3 583,680 + RR42_RS23430 0.41 -1.2 583,732 + RR42_RS23430 0.47 -0.3 583,772 + RR42_RS23430 0.52 -0.7 583,802 - RR42_RS23430 0.56 -0.2 583,820 + RR42_RS23430 0.58 +0.2 583,820 + RR42_RS23430 0.58 -0.1 583,820 + RR42_RS23430 0.58 +0.6 583,907 + RR42_RS23430 0.69 +0.5 583,908 - RR42_RS23430 0.69 -0.4 583,992 - RR42_RS23430 0.79 -0.7 584,050 + RR42_RS23430 0.86 +0.2 584,051 - RR42_RS23430 0.87 -0.7 584,088 - +0.1 584,153 - -0.7 584,264 + -0.7 584,264 + +0.5 584,434 + RR42_RS23435 0.26 -0.7 584,520 - RR42_RS23435 0.35 -0.3 584,649 - RR42_RS23435 0.49 -0.8 584,691 - RR42_RS23435 0.53 -0.5 584,708 - RR42_RS23435 0.55 -0.2 584,786 + RR42_RS23435 0.63 +0.1 584,835 + RR42_RS23435 0.68 +0.5 584,836 - RR42_RS23435 0.68 +0.3 585,096 - -0.3 585,104 + -0.6 585,104 + +1.3 585,104 + +0.6 585,105 - +0.4 585,177 - +1.1 585,177 - +0.9 585,177 - +0.5 585,477 + RR42_RS23440 0.31 -1.1 585,477 + RR42_RS23440 0.31 -1.1 585,478 - RR42_RS23440 0.31 +0.3 585,479 + RR42_RS23440 0.31 -0.0 585,479 + RR42_RS23440 0.31 -0.1 585,479 + RR42_RS23440 0.31 +0.3 585,480 - RR42_RS23440 0.32 +0.2 585,480 - RR42_RS23440 0.32 -0.1 585,492 + RR42_RS23440 0.33 -0.0 585,493 - RR42_RS23440 0.33 +0.8 585,660 - RR42_RS23440 0.50 +0.1 585,714 + RR42_RS23440 0.56 -0.0 585,714 + RR42_RS23440 0.56 +1.2 585,714 + RR42_RS23440 0.56 -0.2 585,714 + RR42_RS23440 0.56 -1.2 585,715 - RR42_RS23440 0.56 -0.5 585,715 - RR42_RS23440 0.56 +0.0 585,855 + RR42_RS23440 0.71 -2.1 585,856 - RR42_RS23440 0.71 -0.4 585,890 + RR42_RS23440 0.74 +0.6 585,890 + RR42_RS23440 0.74 +0.1 585,891 - RR42_RS23440 0.74 -0.3
Or see this region's nucleotide sequence