Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23240 and RR42_RS23245 are separated by 202 nucleotides RR42_RS23245 and RR42_RS23250 are separated by 34 nucleotides RR42_RS23250 and RR42_RS23255 are separated by 189 nucleotides
RR42_RS23240: RR42_RS23240 - 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, at 545,527 to 546,318
_RS23240
RR42_RS23245: RR42_RS23245 - fumarylacetoacetate hydrolase, at 546,521 to 547,231
_RS23245
RR42_RS23250: RR42_RS23250 - glyoxalase, at 547,266 to 547,688
_RS23250
RR42_RS23255: RR42_RS23255 - LysR family transcriptional regulator, at 547,878 to 548,750
_RS23255
Position (kb) 547
548 Strain fitness (log2 ratio) -2
-1
0
1
2 at 546.347 kb on + strand at 546.368 kb on + strand at 546.368 kb on + strand at 546.368 kb on + strand at 546.368 kb on + strand at 546.368 kb on + strand at 546.369 kb on - strand at 546.369 kb on - strand at 546.369 kb on - strand at 546.369 kb on - strand at 546.369 kb on - strand at 546.369 kb on - strand at 546.370 kb on + strand at 546.431 kb on - strand at 546.431 kb on - strand at 546.493 kb on + strand at 546.508 kb on + strand at 546.509 kb on - strand at 546.530 kb on + strand at 546.531 kb on - strand at 546.915 kb on + strand, within RR42_RS23245 at 546.916 kb on - strand, within RR42_RS23245 at 546.981 kb on - strand, within RR42_RS23245 at 547.128 kb on + strand, within RR42_RS23245 at 547.128 kb on + strand, within RR42_RS23245 at 547.129 kb on - strand, within RR42_RS23245 at 547.221 kb on + strand at 547.221 kb on + strand at 547.221 kb on + strand at 547.221 kb on + strand at 547.221 kb on + strand at 547.222 kb on - strand at 547.267 kb on + strand at 547.268 kb on - strand at 547.268 kb on - strand at 547.403 kb on + strand, within RR42_RS23250 at 547.403 kb on + strand, within RR42_RS23250 at 547.404 kb on - strand, within RR42_RS23250 at 547.621 kb on + strand, within RR42_RS23250 at 547.622 kb on - strand, within RR42_RS23250 at 547.835 kb on + strand at 547.835 kb on + strand at 547.887 kb on + strand at 547.888 kb on - strand at 547.888 kb on - strand at 547.981 kb on + strand, within RR42_RS23255 at 547.981 kb on + strand, within RR42_RS23255 at 547.982 kb on - strand, within RR42_RS23255 at 547.982 kb on - strand, within RR42_RS23255 at 547.982 kb on - strand, within RR42_RS23255 at 548.096 kb on - strand, within RR42_RS23255 at 548.096 kb on - strand, within RR42_RS23255 at 548.097 kb on + strand, within RR42_RS23255 at 548.098 kb on - strand, within RR42_RS23255 at 548.256 kb on - strand, within RR42_RS23255 at 548.256 kb on - strand, within RR42_RS23255 at 548.256 kb on - strand, within RR42_RS23255 at 548.439 kb on + strand, within RR42_RS23255 at 548.439 kb on + strand, within RR42_RS23255 at 548.439 kb on + strand, within RR42_RS23255 at 548.478 kb on + strand, within RR42_RS23255 at 548.479 kb on - strand, within RR42_RS23255 at 548.626 kb on + strand, within RR42_RS23255
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 546,347 + -0.4 546,368 + +0.8 546,368 + +0.7 546,368 + +0.7 546,368 + +0.5 546,368 + +0.3 546,369 - -1.4 546,369 - -1.4 546,369 - -0.1 546,369 - -0.2 546,369 - -0.2 546,369 - +0.8 546,370 + +0.6 546,431 - +0.2 546,431 - -0.1 546,493 + -0.5 546,508 + +0.6 546,509 - +1.0 546,530 + -0.7 546,531 - -0.3 546,915 + RR42_RS23245 0.55 +1.1 546,916 - RR42_RS23245 0.56 -1.6 546,981 - RR42_RS23245 0.65 -1.8 547,128 + RR42_RS23245 0.85 -0.1 547,128 + RR42_RS23245 0.85 -0.4 547,129 - RR42_RS23245 0.86 +0.1 547,221 + +0.8 547,221 + +0.4 547,221 + -0.7 547,221 + +0.2 547,221 + -0.0 547,222 - -1.5 547,267 + +0.8 547,268 - -0.2 547,268 - -0.3 547,403 + RR42_RS23250 0.32 +0.1 547,403 + RR42_RS23250 0.32 +1.0 547,404 - RR42_RS23250 0.33 +1.3 547,621 + RR42_RS23250 0.84 -0.1 547,622 - RR42_RS23250 0.84 +0.9 547,835 + +0.4 547,835 + -0.8 547,887 + -1.3 547,888 - +0.1 547,888 - -0.9 547,981 + RR42_RS23255 0.12 +0.5 547,981 + RR42_RS23255 0.12 -0.1 547,982 - RR42_RS23255 0.12 +0.9 547,982 - RR42_RS23255 0.12 -0.7 547,982 - RR42_RS23255 0.12 -0.5 548,096 - RR42_RS23255 0.25 -0.4 548,096 - RR42_RS23255 0.25 -0.2 548,097 + RR42_RS23255 0.25 +0.7 548,098 - RR42_RS23255 0.25 +0.4 548,256 - RR42_RS23255 0.43 -0.2 548,256 - RR42_RS23255 0.43 +1.8 548,256 - RR42_RS23255 0.43 +0.5 548,439 + RR42_RS23255 0.64 +0.3 548,439 + RR42_RS23255 0.64 -1.2 548,439 + RR42_RS23255 0.64 -0.2 548,478 + RR42_RS23255 0.69 +2.0 548,479 - RR42_RS23255 0.69 -0.0 548,626 + RR42_RS23255 0.86 -0.7
Or see this region's nucleotide sequence