Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23215 and RR42_RS23220 are separated by 129 nucleotides RR42_RS23220 and RR42_RS23225 are separated by 222 nucleotides RR42_RS23225 and RR42_RS23230 are separated by 215 nucleotides
RR42_RS23215: RR42_RS23215 - DSBA oxidoreductase, at 540,303 to 541,841
_RS23215
RR42_RS23220: RR42_RS23220 - MarR family transcriptional regulator, at 541,971 to 542,414
_RS23220
RR42_RS23225: RR42_RS23225 - hypothetical protein, at 542,637 to 542,948
_RS23225
RR42_RS23230: RR42_RS23230 - glycerate kinase, at 543,164 to 544,354
_RS23230
Position (kb) 541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2 at 540.976 kb on + strand, within RR42_RS23215 at 540.976 kb on + strand, within RR42_RS23215 at 540.977 kb on - strand, within RR42_RS23215 at 541.001 kb on + strand, within RR42_RS23215 at 541.001 kb on + strand, within RR42_RS23215 at 541.207 kb on - strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.336 kb on + strand, within RR42_RS23215 at 541.337 kb on - strand, within RR42_RS23215 at 541.337 kb on - strand, within RR42_RS23215 at 541.341 kb on - strand, within RR42_RS23215 at 541.341 kb on - strand, within RR42_RS23215 at 541.443 kb on - strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.657 kb on + strand, within RR42_RS23215 at 541.658 kb on - strand, within RR42_RS23215 at 541.658 kb on - strand, within RR42_RS23215 at 541.876 kb on + strand at 541.959 kb on + strand at 542.101 kb on - strand, within RR42_RS23220 at 542.112 kb on + strand, within RR42_RS23220 at 542.113 kb on - strand, within RR42_RS23220 at 542.113 kb on - strand, within RR42_RS23220 at 542.704 kb on + strand, within RR42_RS23225 at 542.704 kb on + strand, within RR42_RS23225 at 542.704 kb on + strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.705 kb on - strand, within RR42_RS23225 at 542.713 kb on + strand, within RR42_RS23225 at 542.763 kb on - strand, within RR42_RS23225 at 543.022 kb on + strand at 543.037 kb on + strand at 543.038 kb on - strand at 543.089 kb on + strand at 543.097 kb on + strand at 543.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 540,976 + RR42_RS23215 0.44 +0.7 540,976 + RR42_RS23215 0.44 -0.3 540,977 - RR42_RS23215 0.44 -0.3 541,001 + RR42_RS23215 0.45 +0.4 541,001 + RR42_RS23215 0.45 +0.1 541,207 - RR42_RS23215 0.59 -0.0 541,336 + RR42_RS23215 0.67 +0.3 541,336 + RR42_RS23215 0.67 +1.0 541,336 + RR42_RS23215 0.67 +0.4 541,336 + RR42_RS23215 0.67 +0.1 541,336 + RR42_RS23215 0.67 -0.3 541,336 + RR42_RS23215 0.67 +2.6 541,336 + RR42_RS23215 0.67 +0.5 541,337 - RR42_RS23215 0.67 +0.7 541,337 - RR42_RS23215 0.67 +1.1 541,341 - RR42_RS23215 0.67 +0.3 541,341 - RR42_RS23215 0.67 -0.0 541,443 - RR42_RS23215 0.74 +0.0 541,657 + RR42_RS23215 0.88 +0.4 541,657 + RR42_RS23215 0.88 +0.3 541,657 + RR42_RS23215 0.88 -0.5 541,657 + RR42_RS23215 0.88 +0.3 541,657 + RR42_RS23215 0.88 +0.7 541,657 + RR42_RS23215 0.88 -0.6 541,658 - RR42_RS23215 0.88 +0.5 541,658 - RR42_RS23215 0.88 +0.8 541,876 + -1.6 541,959 + -0.9 542,101 - RR42_RS23220 0.29 +0.8 542,112 + RR42_RS23220 0.32 +0.3 542,113 - RR42_RS23220 0.32 +0.2 542,113 - RR42_RS23220 0.32 +1.0 542,704 + RR42_RS23225 0.21 -0.4 542,704 + RR42_RS23225 0.21 +1.5 542,704 + RR42_RS23225 0.21 -2.0 542,705 - RR42_RS23225 0.22 -0.0 542,705 - RR42_RS23225 0.22 -0.2 542,705 - RR42_RS23225 0.22 +0.2 542,705 - RR42_RS23225 0.22 +0.0 542,705 - RR42_RS23225 0.22 +0.0 542,713 + RR42_RS23225 0.24 +1.2 542,763 - RR42_RS23225 0.40 -0.0 543,022 + -0.5 543,037 + +1.8 543,038 - -0.0 543,089 + -0.1 543,097 + -0.8 543,097 + -0.3
Or see this region's nucleotide sequence