Experiment: D-Gluconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS17825 and RR42_RS17830 are separated by 282 nucleotides RR42_RS17830 and RR42_RS17835 are separated by 52 nucleotides
RR42_RS17825: RR42_RS17825 - IclR family transcriptional regulator, at 3,854,743 to 3,855,498
_RS17825
RR42_RS17830: RR42_RS17830 - ABC transporter substrate-binding protein, at 3,855,781 to 3,856,764
_RS17830
RR42_RS17835: RR42_RS17835 - cytochrome P450, at 3,856,817 to 3,859,165
_RS17835
Position (kb)
3855
3856
3857 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3854.900 kb on + strand, within RR42_RS17825 at 3854.900 kb on + strand, within RR42_RS17825 at 3854.900 kb on + strand, within RR42_RS17825 at 3854.901 kb on - strand, within RR42_RS17825 at 3854.906 kb on + strand, within RR42_RS17825 at 3854.907 kb on - strand, within RR42_RS17825 at 3854.907 kb on - strand, within RR42_RS17825 at 3854.907 kb on - strand, within RR42_RS17825 at 3855.344 kb on + strand, within RR42_RS17825 at 3855.344 kb on + strand, within RR42_RS17825 at 3855.640 kb on + strand at 3855.792 kb on - strand at 3856.051 kb on + strand, within RR42_RS17830 at 3856.051 kb on + strand, within RR42_RS17830 at 3856.052 kb on - strand, within RR42_RS17830 at 3856.102 kb on + strand, within RR42_RS17830 at 3856.117 kb on + strand, within RR42_RS17830 at 3856.117 kb on + strand, within RR42_RS17830 at 3856.117 kb on + strand, within RR42_RS17830 at 3856.117 kb on + strand, within RR42_RS17830 at 3856.118 kb on - strand, within RR42_RS17830 at 3856.118 kb on - strand, within RR42_RS17830 at 3856.118 kb on - strand, within RR42_RS17830 at 3856.255 kb on + strand, within RR42_RS17830 at 3856.256 kb on - strand, within RR42_RS17830 at 3856.519 kb on + strand, within RR42_RS17830 at 3856.519 kb on + strand, within RR42_RS17830 at 3856.520 kb on - strand, within RR42_RS17830 at 3856.520 kb on - strand, within RR42_RS17830 at 3856.691 kb on - strand at 3856.970 kb on + strand at 3856.970 kb on + strand at 3857.006 kb on + strand at 3857.007 kb on - strand at 3857.007 kb on - strand at 3857.007 kb on - strand at 3857.007 kb on - strand at 3857.150 kb on + strand, within RR42_RS17835 at 3857.150 kb on + strand, within RR42_RS17835 at 3857.157 kb on - strand, within RR42_RS17835 at 3857.288 kb on + strand, within RR42_RS17835 at 3857.289 kb on - strand, within RR42_RS17835 at 3857.289 kb on - strand, within RR42_RS17835 at 3857.289 kb on - strand, within RR42_RS17835 at 3857.289 kb on - strand, within RR42_RS17835 at 3857.414 kb on + strand, within RR42_RS17835 at 3857.414 kb on + strand, within RR42_RS17835 at 3857.414 kb on + strand, within RR42_RS17835 at 3857.414 kb on + strand, within RR42_RS17835 at 3857.437 kb on + strand, within RR42_RS17835 at 3857.437 kb on + strand, within RR42_RS17835 at 3857.564 kb on + strand, within RR42_RS17835
Per-strain Table
Position Strand Gene LocusTag Fraction D-Gluconic Acid (C) remove 3,854,900 + RR42_RS17825 0.21 -0.3 3,854,900 + RR42_RS17825 0.21 +0.3 3,854,900 + RR42_RS17825 0.21 -0.9 3,854,901 - RR42_RS17825 0.21 -0.6 3,854,906 + RR42_RS17825 0.22 -0.5 3,854,907 - RR42_RS17825 0.22 +1.4 3,854,907 - RR42_RS17825 0.22 +1.0 3,854,907 - RR42_RS17825 0.22 +0.2 3,855,344 + RR42_RS17825 0.79 -0.3 3,855,344 + RR42_RS17825 0.79 +0.2 3,855,640 + -1.4 3,855,792 - +0.4 3,856,051 + RR42_RS17830 0.27 -0.4 3,856,051 + RR42_RS17830 0.27 +0.1 3,856,052 - RR42_RS17830 0.28 +0.9 3,856,102 + RR42_RS17830 0.33 +1.6 3,856,117 + RR42_RS17830 0.34 -0.1 3,856,117 + RR42_RS17830 0.34 +0.3 3,856,117 + RR42_RS17830 0.34 -1.2 3,856,117 + RR42_RS17830 0.34 +0.3 3,856,118 - RR42_RS17830 0.34 -0.0 3,856,118 - RR42_RS17830 0.34 +1.3 3,856,118 - RR42_RS17830 0.34 +0.9 3,856,255 + RR42_RS17830 0.48 +0.1 3,856,256 - RR42_RS17830 0.48 +0.7 3,856,519 + RR42_RS17830 0.75 +0.7 3,856,519 + RR42_RS17830 0.75 +0.5 3,856,520 - RR42_RS17830 0.75 +1.0 3,856,520 - RR42_RS17830 0.75 -0.4 3,856,691 - +0.1 3,856,970 + -0.7 3,856,970 + -0.1 3,857,006 + +0.9 3,857,007 - +0.3 3,857,007 - -0.7 3,857,007 - -1.2 3,857,007 - +0.4 3,857,150 + RR42_RS17835 0.14 -2.6 3,857,150 + RR42_RS17835 0.14 +0.1 3,857,157 - RR42_RS17835 0.14 +0.9 3,857,288 + RR42_RS17835 0.20 -0.0 3,857,289 - RR42_RS17835 0.20 +0.1 3,857,289 - RR42_RS17835 0.20 +0.9 3,857,289 - RR42_RS17835 0.20 -0.7 3,857,289 - RR42_RS17835 0.20 +0.6 3,857,414 + RR42_RS17835 0.25 -0.6 3,857,414 + RR42_RS17835 0.25 -0.1 3,857,414 + RR42_RS17835 0.25 -0.9 3,857,414 + RR42_RS17835 0.25 +2.1 3,857,437 + RR42_RS17835 0.26 +0.3 3,857,437 + RR42_RS17835 0.26 +0.1 3,857,564 + RR42_RS17835 0.32 -1.3
Or see this region's nucleotide sequence