Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17830

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17825 and RR42_RS17830 are separated by 282 nucleotidesRR42_RS17830 and RR42_RS17835 are separated by 52 nucleotides RR42_RS17825: RR42_RS17825 - IclR family transcriptional regulator, at 3,854,743 to 3,855,498 _RS17825 RR42_RS17830: RR42_RS17830 - ABC transporter substrate-binding protein, at 3,855,781 to 3,856,764 _RS17830 RR42_RS17835: RR42_RS17835 - cytochrome P450, at 3,856,817 to 3,859,165 _RS17835 Position (kb) 3855 3856 3857Strain fitness (log2 ratio) -2 -1 0 1 2at 3854.900 kb on + strand, within RR42_RS17825at 3854.900 kb on + strand, within RR42_RS17825at 3854.900 kb on + strand, within RR42_RS17825at 3854.901 kb on - strand, within RR42_RS17825at 3854.906 kb on + strand, within RR42_RS17825at 3854.907 kb on - strand, within RR42_RS17825at 3854.907 kb on - strand, within RR42_RS17825at 3854.907 kb on - strand, within RR42_RS17825at 3855.344 kb on + strand, within RR42_RS17825at 3855.344 kb on + strand, within RR42_RS17825at 3855.640 kb on + strandat 3855.792 kb on - strandat 3856.051 kb on + strand, within RR42_RS17830at 3856.051 kb on + strand, within RR42_RS17830at 3856.052 kb on - strand, within RR42_RS17830at 3856.102 kb on + strand, within RR42_RS17830at 3856.117 kb on + strand, within RR42_RS17830at 3856.117 kb on + strand, within RR42_RS17830at 3856.117 kb on + strand, within RR42_RS17830at 3856.117 kb on + strand, within RR42_RS17830at 3856.118 kb on - strand, within RR42_RS17830at 3856.118 kb on - strand, within RR42_RS17830at 3856.118 kb on - strand, within RR42_RS17830at 3856.255 kb on + strand, within RR42_RS17830at 3856.256 kb on - strand, within RR42_RS17830at 3856.519 kb on + strand, within RR42_RS17830at 3856.519 kb on + strand, within RR42_RS17830at 3856.520 kb on - strand, within RR42_RS17830at 3856.520 kb on - strand, within RR42_RS17830at 3856.691 kb on - strandat 3856.970 kb on + strandat 3856.970 kb on + strandat 3857.006 kb on + strandat 3857.007 kb on - strandat 3857.007 kb on - strandat 3857.007 kb on - strandat 3857.007 kb on - strandat 3857.150 kb on + strand, within RR42_RS17835at 3857.150 kb on + strand, within RR42_RS17835at 3857.157 kb on - strand, within RR42_RS17835at 3857.288 kb on + strand, within RR42_RS17835at 3857.289 kb on - strand, within RR42_RS17835at 3857.289 kb on - strand, within RR42_RS17835at 3857.289 kb on - strand, within RR42_RS17835at 3857.289 kb on - strand, within RR42_RS17835at 3857.414 kb on + strand, within RR42_RS17835at 3857.414 kb on + strand, within RR42_RS17835at 3857.414 kb on + strand, within RR42_RS17835at 3857.414 kb on + strand, within RR42_RS17835at 3857.437 kb on + strand, within RR42_RS17835at 3857.437 kb on + strand, within RR42_RS17835at 3857.564 kb on + strand, within RR42_RS17835

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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3,854,900 + RR42_RS17825 0.21 -0.3
3,854,900 + RR42_RS17825 0.21 +0.3
3,854,900 + RR42_RS17825 0.21 -0.9
3,854,901 - RR42_RS17825 0.21 -0.6
3,854,906 + RR42_RS17825 0.22 -0.5
3,854,907 - RR42_RS17825 0.22 +1.4
3,854,907 - RR42_RS17825 0.22 +1.0
3,854,907 - RR42_RS17825 0.22 +0.2
3,855,344 + RR42_RS17825 0.79 -0.3
3,855,344 + RR42_RS17825 0.79 +0.2
3,855,640 + -1.4
3,855,792 - +0.4
3,856,051 + RR42_RS17830 0.27 -0.4
3,856,051 + RR42_RS17830 0.27 +0.1
3,856,052 - RR42_RS17830 0.28 +0.9
3,856,102 + RR42_RS17830 0.33 +1.6
3,856,117 + RR42_RS17830 0.34 -0.1
3,856,117 + RR42_RS17830 0.34 +0.3
3,856,117 + RR42_RS17830 0.34 -1.2
3,856,117 + RR42_RS17830 0.34 +0.3
3,856,118 - RR42_RS17830 0.34 -0.0
3,856,118 - RR42_RS17830 0.34 +1.3
3,856,118 - RR42_RS17830 0.34 +0.9
3,856,255 + RR42_RS17830 0.48 +0.1
3,856,256 - RR42_RS17830 0.48 +0.7
3,856,519 + RR42_RS17830 0.75 +0.7
3,856,519 + RR42_RS17830 0.75 +0.5
3,856,520 - RR42_RS17830 0.75 +1.0
3,856,520 - RR42_RS17830 0.75 -0.4
3,856,691 - +0.1
3,856,970 + -0.7
3,856,970 + -0.1
3,857,006 + +0.9
3,857,007 - +0.3
3,857,007 - -0.7
3,857,007 - -1.2
3,857,007 - +0.4
3,857,150 + RR42_RS17835 0.14 -2.6
3,857,150 + RR42_RS17835 0.14 +0.1
3,857,157 - RR42_RS17835 0.14 +0.9
3,857,288 + RR42_RS17835 0.20 -0.0
3,857,289 - RR42_RS17835 0.20 +0.1
3,857,289 - RR42_RS17835 0.20 +0.9
3,857,289 - RR42_RS17835 0.20 -0.7
3,857,289 - RR42_RS17835 0.20 +0.6
3,857,414 + RR42_RS17835 0.25 -0.6
3,857,414 + RR42_RS17835 0.25 -0.1
3,857,414 + RR42_RS17835 0.25 -0.9
3,857,414 + RR42_RS17835 0.25 +2.1
3,857,437 + RR42_RS17835 0.26 +0.3
3,857,437 + RR42_RS17835 0.26 +0.1
3,857,564 + RR42_RS17835 0.32 -1.3

Or see this region's nucleotide sequence