Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13475

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS13470 and RR42_RS13475 are separated by 275 nucleotidesRR42_RS13475 and RR42_RS13480 are separated by 88 nucleotides RR42_RS13470: RR42_RS13470 - phosphate ABC transporter substrate-binding protein, at 2,905,965 to 2,906,999 _RS13470 RR42_RS13475: RR42_RS13475 - phosphoglucosamine mutase, at 2,907,275 to 2,908,621 _RS13475 RR42_RS13480: RR42_RS13480 - dihydropteroate synthase, at 2,908,710 to 2,909,573 _RS13480 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -2 -1 0 1 2at 2906.494 kb on + strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.494 kb on + strand, within RR42_RS13470at 2906.626 kb on + strand, within RR42_RS13470at 2906.626 kb on + strand, within RR42_RS13470at 2906.627 kb on - strand, within RR42_RS13470at 2906.627 kb on - strand, within RR42_RS13470at 2906.869 kb on + strand, within RR42_RS13470at 2906.869 kb on + strand, within RR42_RS13470at 2906.999 kb on + strandat 2906.999 kb on + strandat 2906.999 kb on + strandat 2906.999 kb on + strandat 2906.999 kb on + strandat 2906.999 kb on + strandat 2906.999 kb on + strandat 2906.999 kb on + strandat 2907.000 kb on - strandat 2907.256 kb on + strandat 2908.672 kb on - strandat 2909.586 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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2,906,494 + RR42_RS13470 0.51 +0.1
2,906,494 + RR42_RS13470 0.51 -1.8
2,906,494 + RR42_RS13470 0.51 +1.2
2,906,494 + RR42_RS13470 0.51 +0.2
2,906,494 + RR42_RS13470 0.51 +0.2
2,906,626 + RR42_RS13470 0.64 -0.2
2,906,626 + RR42_RS13470 0.64 +0.5
2,906,627 - RR42_RS13470 0.64 -0.2
2,906,627 - RR42_RS13470 0.64 -1.5
2,906,869 + RR42_RS13470 0.87 +1.8
2,906,869 + RR42_RS13470 0.87 +1.0
2,906,999 + -0.1
2,906,999 + -0.8
2,906,999 + -0.6
2,906,999 + -0.2
2,906,999 + -0.0
2,906,999 + -0.3
2,906,999 + +0.2
2,906,999 + +0.4
2,907,000 - +0.5
2,907,256 + +0.2
2,908,672 - +0.1
2,909,586 - +0.1

Or see this region's nucleotide sequence