Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08030

Experiment: D-Gluconic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08020 and RR42_RS08025 are separated by 32 nucleotidesRR42_RS08025 and RR42_RS08030 are separated by 35 nucleotidesRR42_RS08030 and RR42_RS08035 are separated by 2 nucleotides RR42_RS08020: RR42_RS08020 - hypothetical protein, at 1,720,379 to 1,720,918 _RS08020 RR42_RS08025: RR42_RS08025 - phage Gp37Gp68, at 1,720,951 to 1,721,838 _RS08025 RR42_RS08030: RR42_RS08030 - hypothetical protein, at 1,721,874 to 1,722,170 _RS08030 RR42_RS08035: RR42_RS08035 - DNA methyltransferase, at 1,722,173 to 1,723,957 _RS08035 Position (kb) 1721 1722 1723Strain fitness (log2 ratio) -2 -1 0 1 2at 1721.399 kb on + strand, within RR42_RS08025at 1721.616 kb on + strand, within RR42_RS08025at 1721.971 kb on + strand, within RR42_RS08030at 1722.105 kb on + strand, within RR42_RS08030at 1722.256 kb on + strandat 1722.256 kb on + strandat 1722.384 kb on + strand, within RR42_RS08035at 1722.963 kb on + strand, within RR42_RS08035at 1723.077 kb on + strand, within RR42_RS08035

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Gluconic Acid (C)
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1,721,399 + RR42_RS08025 0.50 -0.9
1,721,616 + RR42_RS08025 0.75 +0.6
1,721,971 + RR42_RS08030 0.33 +1.9
1,722,105 + RR42_RS08030 0.78 +0.3
1,722,256 + -0.1
1,722,256 + -1.5
1,722,384 + RR42_RS08035 0.12 -2.3
1,722,963 + RR42_RS08035 0.44 +0.1
1,723,077 + RR42_RS08035 0.51 -0.2

Or see this region's nucleotide sequence