Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08755

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
1,612,185	+		MMJJ_RS08750	0.22	+1.3
1,612,191	-		MMJJ_RS08750	0.23	-0.0
1,612,192	+		MMJJ_RS08750	0.23	+0.3
1,612,220	-		MMJJ_RS08750	0.25	-1.0
1,612,221	+		MMJJ_RS08750	0.25	-1.7
1,612,322	+		MMJJ_RS08750	0.33	+1.4
1,612,326	-		MMJJ_RS08750	0.34	+0.6
1,612,327	+		MMJJ_RS08750	0.34	+2.3
1,612,327	+		MMJJ_RS08750	0.34	+1.1
1,612,347	-		MMJJ_RS08750	0.36	-1.7
1,612,348	+		MMJJ_RS08750	0.36	+1.4
1,612,348	+		MMJJ_RS08750	0.36	+1.4
1,612,348	+		MMJJ_RS08750	0.36	+1.0
1,612,353	-		MMJJ_RS08750	0.36	+0.6
1,612,354	+		MMJJ_RS08750	0.36	+3.8
1,612,361	-		MMJJ_RS08750	0.37	+1.2
1,612,362	+		MMJJ_RS08750	0.37	-0.2
1,612,363	-		MMJJ_RS08750	0.37	-3.2
1,612,445	+		MMJJ_RS08750	0.43	+0.3
1,612,445	+		MMJJ_RS08750	0.43	+1.3
1,612,454	-		MMJJ_RS08750	0.44	-0.0
1,612,454	-		MMJJ_RS08750	0.44	+1.2
1,612,454	-		MMJJ_RS08750	0.44	+1.3
1,612,454	-		MMJJ_RS08750	0.44	+1.6
1,612,454	-		MMJJ_RS08750	0.44	+0.8
1,612,454	-		MMJJ_RS08750	0.44	-2.4
1,612,455	+		MMJJ_RS08750	0.44	+1.1
1,612,455	+		MMJJ_RS08750	0.44	-0.1
1,612,455	+		MMJJ_RS08750	0.44	+2.1
1,612,455	+		MMJJ_RS08750	0.44	+1.8
1,612,455	+		MMJJ_RS08750	0.44	+1.4
1,612,456	-		MMJJ_RS08750	0.44	+1.0
1,612,456	-		MMJJ_RS08750	0.44	+1.3
1,612,457	+		MMJJ_RS08750	0.44	-0.3
1,612,457	+		MMJJ_RS08750	0.44	+1.3
1,612,465	-		MMJJ_RS08750	0.45	+1.3
1,612,465	-		MMJJ_RS08750	0.45	+0.4
1,612,471	+		MMJJ_RS08750	0.46	+0.3
1,612,487	+		MMJJ_RS08750	0.47	+1.8
1,612,497	-		MMJJ_RS08750	0.48	+1.6
1,612,498	+		MMJJ_RS08750	0.48	+1.7
1,612,518	-		MMJJ_RS08750	0.49	-0.4
1,612,519	+		MMJJ_RS08750	0.50	+1.3
1,612,563	-		MMJJ_RS08750	0.53	+1.5
1,612,567	+		MMJJ_RS08750	0.53	+1.9
1,612,624	+				+1.4
1,612,675	+		MMJJ_RS08750	0.62	-0.9
1,612,690	+		MMJJ_RS08750	0.63	+2.2
1,612,841	-		MMJJ_RS08750	0.76	+0.4
1,612,841	-		MMJJ_RS08750	0.76	+0.4
1,612,842	+		MMJJ_RS08750	0.76	+0.0
1,612,842	+		MMJJ_RS08750	0.76	+0.7
1,612,860	+		MMJJ_RS08750	0.77	+0.6
1,612,902	+		MMJJ_RS08750	0.81	+1.4
1,612,972	-		MMJJ_RS08750	0.86	+0.2
1,613,011	+		MMJJ_RS08750	0.90	+0.7
1,613,011	+		MMJJ_RS08750	0.90	+1.9
1,613,011	+		MMJJ_RS08750	0.90	-0.2
1,613,012	-		MMJJ_RS08750	0.90	+0.9
1,613,013	+		MMJJ_RS08750	0.90	+2.4
1,613,030	+				+0.6
1,613,059	+				+2.1
1,613,066	+				-0.7
1,613,075	+				-0.9
1,613,080	-				+1.4
1,613,081	+				+1.5
1,613,081	+				+0.3
1,613,081	+				-1.4
1,613,102	-				+0.5
1,613,149	-				+0.8
1,613,149	-				-1.3
1,613,149	-				-0.5
1,613,150	+				-2.0
1,613,150	+				+0.8
1,613,154	-				-0.1
1,613,154	-				+0.4
1,613,154	-				+1.9
1,613,154	-				-3.2
1,613,155	+				-2.5
1,613,155	+				-1.1
1,613,155	+				+0.9
1,613,155	+				+0.1
1,613,155	+				+0.3
1,613,155	+				+0.0
1,613,156	-				+0.0
1,613,157	+				-1.6
1,613,157	+				+0.7
1,613,157	+				+4.2
1,613,158	-				+1.1
1,613,158	-				+0.4
1,613,158	-				+1.4
1,613,159	+				+2.2
1,613,159	+				-2.8
1,613,159	+				+0.4
1,613,159	+				+0.1
1,613,172	-				-0.4
1,613,180	-				-1.0
1,613,181	+				+0.3
1,613,181	+				-2.1
1,613,181	+				-3.0
1,613,183	-				-2.0
1,613,183	-				-0.3
1,613,225	+				-3.2
1,613,229	-				-1.5
1,613,251	+		MMJJ_RS08755	0.11	+0.4
1,613,251	+		MMJJ_RS08755	0.11	+0.4
1,613,287	-		MMJJ_RS08755	0.15	-0.7
1,613,287	-		MMJJ_RS08755	0.15	-0.3
1,613,287	-		MMJJ_RS08755	0.15	-2.7
1,613,287	-		MMJJ_RS08755	0.15	-0.8
1,613,288	+		MMJJ_RS08755	0.15	-2.4
1,613,288	+		MMJJ_RS08755	0.15	-1.7
1,613,288	+		MMJJ_RS08755	0.15	-3.3
1,613,288	+		MMJJ_RS08755	0.15	-3.7
1,613,298	-		MMJJ_RS08755	0.16	-1.2
1,613,301	+		MMJJ_RS08755	0.17	-0.1
1,613,301	+		MMJJ_RS08755	0.17	-1.9
1,613,302	-		MMJJ_RS08755	0.17	-2.1
1,613,302	-		MMJJ_RS08755	0.17	-0.9
1,613,303	+		MMJJ_RS08755	0.17	-1.6
1,613,337	-		MMJJ_RS08755	0.21	-2.0
1,613,338	+		MMJJ_RS08755	0.21	-4.1
1,613,352	+		MMJJ_RS08755	0.22	-1.4
1,613,352	+		MMJJ_RS08755	0.22	-3.0
1,613,393	-		MMJJ_RS08755	0.27	-2.8
1,613,394	+		MMJJ_RS08755	0.27	-1.4
1,613,394	+		MMJJ_RS08755	0.27	-1.7
1,613,421	-		MMJJ_RS08755	0.30	-0.7
1,613,422	+		MMJJ_RS08755	0.30	-2.4
1,613,449	-		MMJJ_RS08755	0.33	-2.4
1,613,450	+		MMJJ_RS08755	0.33	-2.3
1,613,554	-		MMJJ_RS08755	0.44	-3.9
1,613,555	+		MMJJ_RS08755	0.44	-1.7
1,613,555	+		MMJJ_RS08755	0.44	-0.9
1,613,555	+		MMJJ_RS08755	0.44	-2.5
1,613,580	+		MMJJ_RS08755	0.47	-0.5
1,613,584	-		MMJJ_RS08755	0.47	-1.9
1,613,626	-		MMJJ_RS08755	0.52	-1.9
1,613,626	-		MMJJ_RS08755	0.52	-1.9
1,613,627	+		MMJJ_RS08755	0.52	-1.2
1,613,627	+		MMJJ_RS08755	0.52	-2.5
1,613,670	-		MMJJ_RS08755	0.57	-1.4
1,613,670	-		MMJJ_RS08755	0.57	-4.2
1,613,670	-		MMJJ_RS08755	0.57	-1.3
1,613,670	-		MMJJ_RS08755	0.57	-1.0
1,613,671	+		MMJJ_RS08755	0.57	-2.1
1,613,671	+		MMJJ_RS08755	0.57	-2.3
1,613,693	+		MMJJ_RS08755	0.59	-3.2
1,613,693	+		MMJJ_RS08755	0.59	-0.7
1,613,781	-		MMJJ_RS08755	0.69	-1.7
1,613,782	+		MMJJ_RS08755	0.69	-3.8
1,613,793	+		MMJJ_RS08755	0.70	-2.0
1,613,793	+		MMJJ_RS08755	0.70	-3.8
1,613,804	-		MMJJ_RS08755	0.71	-1.6
1,613,805	+		MMJJ_RS08755	0.71	-2.8
1,613,835	-		MMJJ_RS08755	0.75	-1.6
1,613,836	+		MMJJ_RS08755	0.75	-1.3
1,613,836	+		MMJJ_RS08755	0.75	-2.4
1,613,836	+		MMJJ_RS08755	0.75	-1.5
1,613,868	-		MMJJ_RS08755	0.78	-1.5
1,613,869	+		MMJJ_RS08755	0.78	-2.1
1,613,869	+		MMJJ_RS08755	0.78	-2.9
1,613,869	+		MMJJ_RS08755	0.78	-4.4
1,613,869	+		MMJJ_RS08755	0.78	-2.1
1,613,869	+		MMJJ_RS08755	0.78	-3.4
1,613,872	+		MMJJ_RS08755	0.79	-2.9
1,613,872	+		MMJJ_RS08755	0.79	-0.8
1,613,874	+		MMJJ_RS08755	0.79	-3.3
1,613,891	-		MMJJ_RS08755	0.81	-1.2
1,613,910	-		MMJJ_RS08755	0.83	-2.6
1,613,910	-		MMJJ_RS08755	0.83	-2.1
1,613,911	+		MMJJ_RS08755	0.83	-3.6
1,613,911	+		MMJJ_RS08755	0.83	-1.2
1,613,913	+		MMJJ_RS08755	0.83	-4.3
1,613,925	+		MMJJ_RS08755	0.84	-1.0
1,613,995	-				-4.8
1,614,033	-				-0.3
1,614,071	-				-3.0
1,614,084	+				-1.4
1,614,112	-				-1.0
1,614,113	+				-1.1
1,614,113	+				-1.0
1,614,139	-				+0.4
1,614,140	+				-1.6
1,614,200	-		MMJJ_RS08760	0.11	+0.2
1,614,342	-		MMJJ_RS08760	0.25	+1.9
1,614,346	-		MMJJ_RS08760	0.25	+1.7
1,614,346	-		MMJJ_RS08760	0.25	+0.4
1,614,393	-		MMJJ_RS08760	0.30	+1.3
1,614,472	-		MMJJ_RS08760	0.37	-0.3
1,614,473	+		MMJJ_RS08760	0.37	+0.5
1,614,476	+		MMJJ_RS08760	0.38	+4.4
1,614,478	-		MMJJ_RS08760	0.38	+0.4
1,614,478	-		MMJJ_RS08760	0.38	+3.0
1,614,478	-		MMJJ_RS08760	0.38	-0.2
1,614,505	+		MMJJ_RS08760	0.40	+0.4
1,614,512	+		MMJJ_RS08760	0.41	+1.1
1,614,520	+		MMJJ_RS08760	0.42	+0.4
1,614,544	-		MMJJ_RS08760	0.44	+2.2
1,614,592	+		MMJJ_RS08760	0.49	+0.2
1,614,601	-		MMJJ_RS08760	0.49	+1.2
1,614,602	+		MMJJ_RS08760	0.50	+0.3
1,614,602	+		MMJJ_RS08760	0.50	+1.7
1,614,602	+		MMJJ_RS08760	0.50	+2.3
1,614,602	+		MMJJ_RS08760	0.50	+2.0
1,614,602	+		MMJJ_RS08760	0.50	-1.3
1,614,602	+		MMJJ_RS08760	0.50	-0.9
1,614,614	+		MMJJ_RS08760	0.51	-0.7
1,614,691	+		MMJJ_RS08760	0.58	+3.4
1,614,709	-		MMJJ_RS08760	0.60	+0.9
1,614,718	-		MMJJ_RS08760	0.61	+1.5
1,614,718	-		MMJJ_RS08760	0.61	+1.7
1,614,721	-		MMJJ_RS08760	0.61	+1.1
1,614,722	+		MMJJ_RS08760	0.61	+0.7
1,614,722	+		MMJJ_RS08760	0.61	-0.3
1,614,728	+		MMJJ_RS08760	0.62	+1.1
1,614,728	+		MMJJ_RS08760	0.62	+0.1
1,614,731	-		MMJJ_RS08760	0.62	+1.2
1,614,773	-		MMJJ_RS08760	0.66	+1.9
1,614,773	-		MMJJ_RS08760	0.66	-0.2
1,614,795	-		MMJJ_RS08760	0.68	+0.2
1,614,850	+		MMJJ_RS08760	0.73	+0.2
1,614,907	+		MMJJ_RS08760	0.79	+1.2
1,614,949	-		MMJJ_RS08760	0.83	+1.3
1,614,949	-		MMJJ_RS08760	0.83	+0.5
1,614,949	-		MMJJ_RS08760	0.83	+0.7
1,614,950	+		MMJJ_RS08760	0.83	+0.1
1,614,950	+		MMJJ_RS08760	0.83	+0.3
1,614,950	+		MMJJ_RS08760	0.83	+1.3
1,614,984	+		MMJJ_RS08760	0.86	-1.2
1,615,013	-		MMJJ_RS08760	0.89	+0.6
1,615,025	+		MMJJ_RS08760	0.90	+0.8
1,615,028	-				+1.1
1,615,060	-				+1.0
1,615,061	+				+1.0