Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05765

Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Vitamin FREE
1,073,979	+		MMJJ_RS05750	0.88	+0.1
1,074,044	-				-1.7
1,074,078	-				-0.1
1,074,078	-				-0.3
1,074,079	+				+0.7
1,074,079	+				+0.7
1,074,103	-				-1.4
1,074,104	+				-1.2
1,074,107	-				+0.0
1,074,131	-		MMJJ_RS05755	0.12	+1.6
1,074,131	-		MMJJ_RS05755	0.12	-1.0
1,074,160	-		MMJJ_RS05755	0.18	+0.0
1,074,191	-		MMJJ_RS05755	0.25	+0.5
1,074,191	-		MMJJ_RS05755	0.25	-0.9
1,074,191	-		MMJJ_RS05755	0.25	-0.7
1,074,192	+		MMJJ_RS05755	0.25	+0.4
1,074,192	+		MMJJ_RS05755	0.25	+0.8
1,074,212	-		MMJJ_RS05755	0.30	-0.2
1,074,233	+		MMJJ_RS05755	0.34	+0.3
1,074,252	+		MMJJ_RS05755	0.39	-2.0
1,074,252	+		MMJJ_RS05755	0.39	+0.9
1,074,252	+		MMJJ_RS05755	0.39	-1.4
1,074,254	-		MMJJ_RS05755	0.39	-2.0
1,074,255	+		MMJJ_RS05755	0.39	+0.5
1,074,255	+		MMJJ_RS05755	0.39	-0.3
1,074,255	+		MMJJ_RS05755	0.39	-0.3
1,074,268	-		MMJJ_RS05755	0.42	-0.3
1,074,269	+		MMJJ_RS05755	0.42	-0.3
1,074,269	+		MMJJ_RS05755	0.42	-0.6
1,074,310	-		MMJJ_RS05755	0.51	-0.7
1,074,310	-		MMJJ_RS05755	0.51	+0.2
1,074,310	-		MMJJ_RS05755	0.51	+0.1
1,074,312	-		MMJJ_RS05755	0.52	-1.1
1,074,312	-		MMJJ_RS05755	0.52	+0.0
1,074,312	-		MMJJ_RS05755	0.52	+1.9
1,074,312	-		MMJJ_RS05755	0.52	+1.7
1,074,313	+		MMJJ_RS05755	0.52	-1.1
1,074,313	+		MMJJ_RS05755	0.52	+0.5
1,074,313	+		MMJJ_RS05755	0.52	+1.1
1,074,313	+		MMJJ_RS05755	0.52	-0.1
1,074,314	-		MMJJ_RS05755	0.52	-1.8
1,074,314	-		MMJJ_RS05755	0.52	+0.1
1,074,315	+		MMJJ_RS05755	0.53	-0.1
1,074,315	+		MMJJ_RS05755	0.53	-0.1
1,074,315	+		MMJJ_RS05755	0.53	+0.9
1,074,315	+		MMJJ_RS05755	0.53	-0.4
1,074,315	+		MMJJ_RS05755	0.53	-0.8
1,074,315	+		MMJJ_RS05755	0.53	+1.2
1,074,315	+		MMJJ_RS05755	0.53	-0.9
1,074,319	-		MMJJ_RS05755	0.53	+0.3
1,074,319	-		MMJJ_RS05755	0.53	-0.4
1,074,319	-		MMJJ_RS05755	0.53	+0.4
1,074,319	-		MMJJ_RS05755	0.53	-0.0
1,074,320	+		MMJJ_RS05755	0.54	-1.1
1,074,320	+		MMJJ_RS05755	0.54	+0.2
1,074,320	+		MMJJ_RS05755	0.54	+1.3
1,074,320	+		MMJJ_RS05755	0.54	+0.3
1,074,323	-		MMJJ_RS05755	0.54	+1.2
1,074,367	-		MMJJ_RS05755	0.64	-0.1
1,074,386	-		MMJJ_RS05755	0.68	-2.4
1,074,404	+		MMJJ_RS05755	0.72	+1.7
1,074,413	+		MMJJ_RS05755	0.74	+0.3
1,074,442	-		MMJJ_RS05755	0.81	-1.1
1,074,442	-		MMJJ_RS05755	0.81	+2.1
1,074,443	+		MMJJ_RS05755	0.81	+0.6
1,074,475	-		MMJJ_RS05755	0.88	-0.7
1,074,479	-		MMJJ_RS05755	0.89	-1.6
1,074,500	-				-1.4
1,074,503	-				+1.1
1,074,503	-				+1.3
1,074,532	+				-1.1
1,074,532	+				-1.8
1,074,532	+				-0.1
1,074,532	+				-1.9
1,074,532	+				+0.0
1,074,556	+				-0.4
1,074,583	-				-0.5
1,074,584	+				-2.3
1,074,584	+				+0.5
1,074,584	+				-0.5
1,074,584	+				+0.3
1,074,586	-				-1.8
1,074,586	-				+0.2
1,074,587	+				+0.3
1,074,587	+				-0.1
1,074,590	+				+1.6
1,074,612	-		MMJJ_RS05760	0.10	+1.2
1,074,613	+		MMJJ_RS05760	0.11	+0.1
1,074,676	-		MMJJ_RS05760	0.26	-0.1
1,074,676	-		MMJJ_RS05760	0.26	-1.3
1,074,677	+		MMJJ_RS05760	0.26	-0.8
1,074,723	-		MMJJ_RS05760	0.38	+0.8
1,074,724	+		MMJJ_RS05760	0.38	+1.3
1,074,724	+		MMJJ_RS05760	0.38	-0.6
1,074,737	-		MMJJ_RS05760	0.41	-0.9
1,074,742	+		MMJJ_RS05760	0.42	+0.1
1,074,753	-		MMJJ_RS05760	0.45	+0.0
1,074,769	+		MMJJ_RS05760	0.49	+1.0
1,074,769	+		MMJJ_RS05760	0.49	+0.3
1,074,785	-		MMJJ_RS05760	0.53	-1.8
1,074,785	-		MMJJ_RS05760	0.53	+0.8
1,074,810	-		MMJJ_RS05760	0.59	+0.2
1,074,811	+		MMJJ_RS05760	0.59	-0.1
1,074,819	-		MMJJ_RS05760	0.61	-2.0
1,074,831	-		MMJJ_RS05760	0.64	+1.0
1,074,831	-		MMJJ_RS05760	0.64	+0.0
1,074,847	-		MMJJ_RS05760	0.68	-0.7
1,074,847	-		MMJJ_RS05760	0.68	+0.4
1,074,847	-		MMJJ_RS05760	0.68	-0.8
1,074,863	-		MMJJ_RS05760	0.72	-0.8
1,074,864	+		MMJJ_RS05760	0.72	+2.2
1,074,864	+		MMJJ_RS05760	0.72	-0.6
1,074,864	+		MMJJ_RS05760	0.72	+0.4
1,074,865	-		MMJJ_RS05760	0.72	-1.6
1,074,865	-		MMJJ_RS05760	0.72	-0.0
1,074,865	-		MMJJ_RS05760	0.72	-0.5
1,074,865	-		MMJJ_RS05760	0.72	+0.5
1,074,865	-		MMJJ_RS05760	0.72	+0.9
1,074,866	+		MMJJ_RS05760	0.73	-0.7
1,074,866	+		MMJJ_RS05760	0.73	+1.8
1,074,866	+		MMJJ_RS05760	0.73	+0.2
1,074,866	+		MMJJ_RS05760	0.73	+0.3
1,074,876	-		MMJJ_RS05760	0.75	-1.9
1,074,876	-		MMJJ_RS05760	0.75	+1.9
1,074,877	+		MMJJ_RS05760	0.75	+0.0
1,074,891	-		MMJJ_RS05760	0.79	+1.2
1,074,891	-		MMJJ_RS05760	0.79	-0.8
1,074,892	+		MMJJ_RS05760	0.79	+0.4
1,074,898	+		MMJJ_RS05760	0.80	+0.3
1,074,898	+		MMJJ_RS05760	0.80	+0.9
1,074,898	+		MMJJ_RS05760	0.80	-0.7
1,074,898	+		MMJJ_RS05760	0.80	+0.7
1,074,902	-		MMJJ_RS05760	0.81	-1.5
1,074,902	-		MMJJ_RS05760	0.81	-1.8
1,074,902	-		MMJJ_RS05760	0.81	-1.0
1,074,902	-		MMJJ_RS05760	0.81	-1.7
1,074,903	+		MMJJ_RS05760	0.82	-1.5
1,074,907	-		MMJJ_RS05760	0.83	+1.7
1,074,907	-		MMJJ_RS05760	0.83	-1.3
1,074,907	-		MMJJ_RS05760	0.83	-0.9
1,074,907	-		MMJJ_RS05760	0.83	-0.9
1,074,907	-		MMJJ_RS05760	0.83	+1.3
1,074,907	-		MMJJ_RS05760	0.83	-1.5
1,074,907	-		MMJJ_RS05760	0.83	-0.8
1,074,907	-		MMJJ_RS05760	0.83	-0.7
1,074,907	-		MMJJ_RS05760	0.83	-2.0
1,074,908	+		MMJJ_RS05760	0.83	+0.4
1,074,908	+		MMJJ_RS05760	0.83	-0.5
1,074,908	+		MMJJ_RS05760	0.83	+0.9
1,074,908	+		MMJJ_RS05760	0.83	+1.7
1,074,908	+		MMJJ_RS05760	0.83	+1.8
1,074,908	+		MMJJ_RS05760	0.83	+1.8
1,074,908	+		MMJJ_RS05760	0.83	+1.2
1,074,913	-		MMJJ_RS05760	0.84	+0.8
1,074,913	-		MMJJ_RS05760	0.84	+0.6
1,074,913	-		MMJJ_RS05760	0.84	-0.1
1,074,914	+		MMJJ_RS05760	0.84	-0.3
1,074,914	+		MMJJ_RS05760	0.84	+0.3
1,074,914	+		MMJJ_RS05760	0.84	+1.0
1,074,914	+		MMJJ_RS05760	0.84	+1.1
1,074,914	+		MMJJ_RS05760	0.84	-0.7
1,074,924	-		MMJJ_RS05760	0.87	-0.9
1,074,925	+		MMJJ_RS05760	0.87	-1.0
1,074,925	+		MMJJ_RS05760	0.87	-0.2
1,074,968	-				-0.9
1,074,968	-				-0.2
1,074,969	+				+1.8
1,075,075	-		MMJJ_RS05765	0.26	-1.8
1,075,323	-		MMJJ_RS05765	0.87	-2.3
1,075,390	-				-1.8
1,075,391	+				-0.9
1,075,398	-				-1.8
1,075,444	-				-0.9
1,075,660	-		MMJJ_RS05770	0.27	-1.9
1,075,666	-		MMJJ_RS05770	0.27	-1.6
1,075,690	+		MMJJ_RS05770	0.30	-2.2
1,075,803	-		MMJJ_RS05770	0.41	-2.1
1,075,982	+				+0.7
1,076,028	+		MMJJ_RS05770	0.65	-2.1