Experiment: D-Maltose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22835 and CA265_RS22840 are separated by 533 nucleotides CA265_RS22840 and CA265_RS22845 are separated by 35 nucleotides
CA265_RS22835: CA265_RS22835 - ATP-dependent DNA helicase RecG, at 5,585,805 to 5,587,910
_RS22835
CA265_RS22840: CA265_RS22840 - SusC/RagA family TonB-linked outer membrane protein, at 5,588,444 to 5,591,629
_RS22840
CA265_RS22845: CA265_RS22845 - RagB/SusD family nutrient uptake outer membrane protein, at 5,591,665 to 5,593,542
_RS22845
Position (kb) 5588
5589
5590
5591
5592 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5587.591 kb on + strand, within CA265_RS22835 at 5587.592 kb on - strand, within CA265_RS22835 at 5587.608 kb on - strand, within CA265_RS22835 at 5587.688 kb on - strand, within CA265_RS22835 at 5587.775 kb on + strand at 5587.953 kb on + strand at 5588.018 kb on - strand at 5588.019 kb on + strand at 5588.113 kb on + strand at 5588.121 kb on - strand at 5588.154 kb on + strand at 5588.177 kb on - strand at 5588.199 kb on + strand at 5588.250 kb on - strand at 5588.268 kb on + strand at 5588.312 kb on - strand at 5588.316 kb on + strand at 5588.321 kb on + strand at 5588.330 kb on + strand at 5588.357 kb on - strand at 5588.393 kb on - strand at 5588.512 kb on + strand at 5588.512 kb on + strand at 5588.617 kb on + strand at 5588.617 kb on + strand at 5588.653 kb on + strand at 5588.653 kb on + strand at 5588.661 kb on + strand at 5588.713 kb on - strand at 5588.754 kb on + strand at 5588.754 kb on + strand at 5588.758 kb on - strand at 5588.758 kb on - strand at 5588.787 kb on + strand, within CA265_RS22840 at 5588.788 kb on - strand, within CA265_RS22840 at 5588.923 kb on + strand, within CA265_RS22840 at 5588.924 kb on - strand, within CA265_RS22840 at 5588.942 kb on - strand, within CA265_RS22840 at 5588.943 kb on + strand, within CA265_RS22840 at 5588.943 kb on + strand, within CA265_RS22840 at 5588.944 kb on - strand, within CA265_RS22840 at 5589.074 kb on + strand, within CA265_RS22840 at 5589.075 kb on - strand, within CA265_RS22840 at 5589.075 kb on - strand, within CA265_RS22840 at 5589.120 kb on + strand, within CA265_RS22840 at 5589.125 kb on - strand, within CA265_RS22840 at 5589.184 kb on + strand, within CA265_RS22840 at 5589.184 kb on + strand, within CA265_RS22840 at 5589.212 kb on + strand, within CA265_RS22840 at 5589.225 kb on + strand, within CA265_RS22840 at 5589.226 kb on - strand, within CA265_RS22840 at 5589.312 kb on + strand, within CA265_RS22840 at 5589.316 kb on + strand, within CA265_RS22840 at 5589.335 kb on - strand, within CA265_RS22840 at 5589.467 kb on - strand, within CA265_RS22840 at 5589.492 kb on - strand, within CA265_RS22840 at 5589.514 kb on - strand, within CA265_RS22840 at 5589.514 kb on - strand, within CA265_RS22840 at 5589.528 kb on - strand, within CA265_RS22840 at 5589.531 kb on - strand, within CA265_RS22840 at 5589.533 kb on - strand, within CA265_RS22840 at 5589.560 kb on + strand, within CA265_RS22840 at 5589.600 kb on - strand, within CA265_RS22840 at 5589.601 kb on + strand, within CA265_RS22840 at 5589.602 kb on - strand, within CA265_RS22840 at 5589.605 kb on - strand, within CA265_RS22840 at 5589.621 kb on + strand, within CA265_RS22840 at 5589.621 kb on + strand, within CA265_RS22840 at 5589.622 kb on - strand, within CA265_RS22840 at 5589.708 kb on + strand, within CA265_RS22840 at 5589.749 kb on + strand, within CA265_RS22840 at 5589.750 kb on - strand, within CA265_RS22840 at 5589.750 kb on - strand, within CA265_RS22840 at 5589.756 kb on - strand, within CA265_RS22840 at 5589.805 kb on + strand, within CA265_RS22840 at 5589.806 kb on - strand, within CA265_RS22840 at 5589.896 kb on + strand, within CA265_RS22840 at 5589.975 kb on + strand, within CA265_RS22840 at 5589.976 kb on - strand, within CA265_RS22840 at 5589.999 kb on + strand, within CA265_RS22840 at 5589.999 kb on + strand, within CA265_RS22840 at 5590.028 kb on - strand, within CA265_RS22840 at 5590.102 kb on + strand, within CA265_RS22840 at 5590.102 kb on + strand, within CA265_RS22840 at 5590.105 kb on + strand, within CA265_RS22840 at 5590.165 kb on + strand, within CA265_RS22840 at 5590.177 kb on + strand, within CA265_RS22840 at 5590.177 kb on + strand, within CA265_RS22840 at 5590.178 kb on - strand, within CA265_RS22840 at 5590.178 kb on - strand, within CA265_RS22840 at 5590.178 kb on - strand, within CA265_RS22840 at 5590.261 kb on - strand, within CA265_RS22840 at 5590.278 kb on + strand, within CA265_RS22840 at 5590.284 kb on - strand, within CA265_RS22840 at 5590.302 kb on - strand, within CA265_RS22840 at 5590.307 kb on + strand, within CA265_RS22840 at 5590.308 kb on - strand, within CA265_RS22840 at 5590.356 kb on - strand, within CA265_RS22840 at 5590.358 kb on - strand, within CA265_RS22840 at 5590.448 kb on - strand, within CA265_RS22840 at 5590.470 kb on + strand, within CA265_RS22840 at 5590.471 kb on - strand, within CA265_RS22840 at 5590.535 kb on + strand, within CA265_RS22840 at 5590.565 kb on - strand, within CA265_RS22840 at 5590.571 kb on - strand, within CA265_RS22840 at 5590.660 kb on - strand, within CA265_RS22840 at 5590.681 kb on + strand, within CA265_RS22840 at 5590.682 kb on - strand, within CA265_RS22840 at 5590.797 kb on + strand, within CA265_RS22840 at 5590.834 kb on - strand, within CA265_RS22840 at 5590.952 kb on - strand, within CA265_RS22840 at 5590.989 kb on - strand, within CA265_RS22840 at 5591.039 kb on + strand, within CA265_RS22840 at 5591.039 kb on + strand, within CA265_RS22840 at 5591.039 kb on + strand, within CA265_RS22840 at 5591.040 kb on - strand, within CA265_RS22840 at 5591.056 kb on + strand, within CA265_RS22840 at 5591.057 kb on - strand, within CA265_RS22840 at 5591.122 kb on + strand, within CA265_RS22840 at 5591.187 kb on - strand, within CA265_RS22840 at 5591.202 kb on + strand, within CA265_RS22840 at 5591.203 kb on - strand, within CA265_RS22840 at 5591.213 kb on - strand, within CA265_RS22840 at 5591.267 kb on - strand, within CA265_RS22840 at 5591.267 kb on - strand, within CA265_RS22840 at 5591.292 kb on - strand, within CA265_RS22840 at 5591.292 kb on - strand, within CA265_RS22840 at 5591.314 kb on + strand at 5591.356 kb on + strand at 5591.356 kb on + strand at 5591.358 kb on - strand at 5591.361 kb on - strand at 5591.365 kb on + strand at 5591.366 kb on - strand at 5591.418 kb on - strand at 5591.436 kb on + strand at 5591.437 kb on - strand at 5591.443 kb on - strand at 5591.443 kb on - strand at 5591.443 kb on - strand at 5591.443 kb on - strand at 5591.448 kb on - strand at 5591.450 kb on - strand at 5591.488 kb on + strand at 5591.489 kb on - strand at 5591.494 kb on - strand at 5591.494 kb on - strand at 5591.494 kb on - strand at 5591.499 kb on + strand at 5591.545 kb on - strand at 5591.602 kb on + strand at 5591.606 kb on - strand at 5591.614 kb on + strand at 5591.614 kb on + strand at 5591.635 kb on + strand at 5591.635 kb on + strand at 5591.635 kb on + strand at 5591.636 kb on - strand at 5591.636 kb on - strand at 5591.636 kb on - strand at 5591.636 kb on - strand at 5591.637 kb on + strand at 5591.638 kb on - strand at 5591.693 kb on + strand at 5591.699 kb on + strand at 5591.712 kb on + strand at 5591.753 kb on + strand at 5591.827 kb on - strand at 5591.828 kb on + strand at 5591.899 kb on - strand, within CA265_RS22845 at 5591.932 kb on - strand, within CA265_RS22845 at 5591.952 kb on + strand, within CA265_RS22845 at 5591.952 kb on + strand, within CA265_RS22845 at 5591.974 kb on - strand, within CA265_RS22845 at 5591.974 kb on - strand, within CA265_RS22845 at 5591.995 kb on + strand, within CA265_RS22845 at 5592.049 kb on - strand, within CA265_RS22845 at 5592.128 kb on + strand, within CA265_RS22845 at 5592.154 kb on - strand, within CA265_RS22845 at 5592.183 kb on + strand, within CA265_RS22845 at 5592.187 kb on + strand, within CA265_RS22845 at 5592.188 kb on - strand, within CA265_RS22845 at 5592.208 kb on + strand, within CA265_RS22845 at 5592.232 kb on - strand, within CA265_RS22845 at 5592.234 kb on + strand, within CA265_RS22845 at 5592.329 kb on + strand, within CA265_RS22845 at 5592.372 kb on + strand, within CA265_RS22845 at 5592.373 kb on - strand, within CA265_RS22845 at 5592.416 kb on + strand, within CA265_RS22845 at 5592.417 kb on - strand, within CA265_RS22845 at 5592.513 kb on - strand, within CA265_RS22845 at 5592.558 kb on + strand, within CA265_RS22845 at 5592.558 kb on + strand, within CA265_RS22845 at 5592.559 kb on - strand, within CA265_RS22845 at 5592.580 kb on - strand, within CA265_RS22845 at 5592.593 kb on + strand, within CA265_RS22845
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose (C) remove 5,587,591 + CA265_RS22835 0.85 -0.1 5,587,592 - CA265_RS22835 0.85 +0.1 5,587,608 - CA265_RS22835 0.86 -1.6 5,587,688 - CA265_RS22835 0.89 -0.2 5,587,775 + -0.5 5,587,953 + -0.7 5,588,018 - +0.4 5,588,019 + -0.2 5,588,113 + +0.3 5,588,121 - -0.3 5,588,154 + +1.0 5,588,177 - -0.6 5,588,199 + +1.0 5,588,250 - +0.3 5,588,268 + +0.5 5,588,312 - -0.5 5,588,316 + -0.6 5,588,321 + +0.9 5,588,330 + +0.4 5,588,357 - +0.3 5,588,393 - +1.7 5,588,512 + -0.1 5,588,512 + -1.4 5,588,617 + +0.9 5,588,617 + -1.1 5,588,653 + +0.6 5,588,653 + +2.7 5,588,661 + -1.2 5,588,713 - -0.3 5,588,754 + -0.0 5,588,754 + -1.0 5,588,758 - +0.8 5,588,758 - +0.0 5,588,787 + CA265_RS22840 0.11 -1.4 5,588,788 - CA265_RS22840 0.11 +1.1 5,588,923 + CA265_RS22840 0.15 +0.6 5,588,924 - CA265_RS22840 0.15 -2.6 5,588,942 - CA265_RS22840 0.16 -0.0 5,588,943 + CA265_RS22840 0.16 -2.4 5,588,943 + CA265_RS22840 0.16 +0.5 5,588,944 - CA265_RS22840 0.16 -0.5 5,589,074 + CA265_RS22840 0.20 +0.5 5,589,075 - CA265_RS22840 0.20 -0.7 5,589,075 - CA265_RS22840 0.20 +0.1 5,589,120 + CA265_RS22840 0.21 +0.3 5,589,125 - CA265_RS22840 0.21 +0.1 5,589,184 + CA265_RS22840 0.23 -0.5 5,589,184 + CA265_RS22840 0.23 +0.2 5,589,212 + CA265_RS22840 0.24 -0.4 5,589,225 + CA265_RS22840 0.25 +0.6 5,589,226 - CA265_RS22840 0.25 -1.5 5,589,312 + CA265_RS22840 0.27 -2.5 5,589,316 + CA265_RS22840 0.27 +1.1 5,589,335 - CA265_RS22840 0.28 -1.2 5,589,467 - CA265_RS22840 0.32 -0.1 5,589,492 - CA265_RS22840 0.33 -0.1 5,589,514 - CA265_RS22840 0.34 +0.2 5,589,514 - CA265_RS22840 0.34 +0.1 5,589,528 - CA265_RS22840 0.34 +0.1 5,589,531 - CA265_RS22840 0.34 +0.0 5,589,533 - CA265_RS22840 0.34 +0.8 5,589,560 + CA265_RS22840 0.35 -0.4 5,589,600 - CA265_RS22840 0.36 -0.7 5,589,601 + CA265_RS22840 0.36 -0.5 5,589,602 - CA265_RS22840 0.36 +0.4 5,589,605 - CA265_RS22840 0.36 -1.5 5,589,621 + CA265_RS22840 0.37 -1.9 5,589,621 + CA265_RS22840 0.37 +0.1 5,589,622 - CA265_RS22840 0.37 +1.1 5,589,708 + CA265_RS22840 0.40 -1.4 5,589,749 + CA265_RS22840 0.41 +1.0 5,589,750 - CA265_RS22840 0.41 -0.1 5,589,750 - CA265_RS22840 0.41 +0.4 5,589,756 - CA265_RS22840 0.41 +0.4 5,589,805 + CA265_RS22840 0.43 +0.8 5,589,806 - CA265_RS22840 0.43 -0.1 5,589,896 + CA265_RS22840 0.46 +0.2 5,589,975 + CA265_RS22840 0.48 +0.0 5,589,976 - CA265_RS22840 0.48 +0.7 5,589,999 + CA265_RS22840 0.49 -0.2 5,589,999 + CA265_RS22840 0.49 +0.1 5,590,028 - CA265_RS22840 0.50 +0.6 5,590,102 + CA265_RS22840 0.52 +0.5 5,590,102 + CA265_RS22840 0.52 +0.1 5,590,105 + CA265_RS22840 0.52 -1.7 5,590,165 + CA265_RS22840 0.54 -0.3 5,590,177 + CA265_RS22840 0.54 +0.9 5,590,177 + CA265_RS22840 0.54 -0.2 5,590,178 - CA265_RS22840 0.54 +0.2 5,590,178 - CA265_RS22840 0.54 -0.9 5,590,178 - CA265_RS22840 0.54 +0.3 5,590,261 - CA265_RS22840 0.57 -0.1 5,590,278 + CA265_RS22840 0.58 -0.2 5,590,284 - CA265_RS22840 0.58 +1.1 5,590,302 - CA265_RS22840 0.58 +0.4 5,590,307 + CA265_RS22840 0.58 -2.4 5,590,308 - CA265_RS22840 0.59 +0.3 5,590,356 - CA265_RS22840 0.60 -1.1 5,590,358 - CA265_RS22840 0.60 -0.3 5,590,448 - CA265_RS22840 0.63 -1.1 5,590,470 + CA265_RS22840 0.64 +0.3 5,590,471 - CA265_RS22840 0.64 -0.3 5,590,535 + CA265_RS22840 0.66 -0.1 5,590,565 - CA265_RS22840 0.67 +2.0 5,590,571 - CA265_RS22840 0.67 -1.5 5,590,660 - CA265_RS22840 0.70 -0.6 5,590,681 + CA265_RS22840 0.70 -0.3 5,590,682 - CA265_RS22840 0.70 -0.7 5,590,797 + CA265_RS22840 0.74 -0.9 5,590,834 - CA265_RS22840 0.75 -0.9 5,590,952 - CA265_RS22840 0.79 -0.1 5,590,989 - CA265_RS22840 0.80 -0.5 5,591,039 + CA265_RS22840 0.81 -0.5 5,591,039 + CA265_RS22840 0.81 +0.4 5,591,039 + CA265_RS22840 0.81 -1.0 5,591,040 - CA265_RS22840 0.81 -0.2 5,591,056 + CA265_RS22840 0.82 -0.1 5,591,057 - CA265_RS22840 0.82 +0.6 5,591,122 + CA265_RS22840 0.84 +0.2 5,591,187 - CA265_RS22840 0.86 -0.5 5,591,202 + CA265_RS22840 0.87 +3.1 5,591,203 - CA265_RS22840 0.87 +0.4 5,591,213 - CA265_RS22840 0.87 -0.3 5,591,267 - CA265_RS22840 0.89 +0.7 5,591,267 - CA265_RS22840 0.89 -1.0 5,591,292 - CA265_RS22840 0.89 +2.5 5,591,292 - CA265_RS22840 0.89 -0.7 5,591,314 + -1.6 5,591,356 + +1.4 5,591,356 + -0.6 5,591,358 - -0.2 5,591,361 - +0.3 5,591,365 + +1.5 5,591,366 - -0.5 5,591,418 - +3.1 5,591,436 + +0.1 5,591,437 - +0.7 5,591,443 - -0.1 5,591,443 - +0.6 5,591,443 - -0.1 5,591,443 - -0.7 5,591,448 - -0.1 5,591,450 - -0.1 5,591,488 + +0.5 5,591,489 - -0.4 5,591,494 - -0.1 5,591,494 - +0.2 5,591,494 - +0.5 5,591,499 + +0.1 5,591,545 - +0.3 5,591,602 + -0.2 5,591,606 - -0.4 5,591,614 + -1.4 5,591,614 + -0.4 5,591,635 + -0.0 5,591,635 + +0.2 5,591,635 + -0.9 5,591,636 - +0.1 5,591,636 - +0.5 5,591,636 - -0.4 5,591,636 - -0.4 5,591,637 + +0.1 5,591,638 - +0.7 5,591,693 + +0.4 5,591,699 + -1.1 5,591,712 + -0.8 5,591,753 + -1.1 5,591,827 - +0.2 5,591,828 + -1.4 5,591,899 - CA265_RS22845 0.12 -0.6 5,591,932 - CA265_RS22845 0.14 +0.6 5,591,952 + CA265_RS22845 0.15 +0.5 5,591,952 + CA265_RS22845 0.15 -0.8 5,591,974 - CA265_RS22845 0.16 +0.2 5,591,974 - CA265_RS22845 0.16 +0.0 5,591,995 + CA265_RS22845 0.18 -0.4 5,592,049 - CA265_RS22845 0.20 +0.9 5,592,128 + CA265_RS22845 0.25 -1.2 5,592,154 - CA265_RS22845 0.26 -0.4 5,592,183 + CA265_RS22845 0.28 -0.0 5,592,187 + CA265_RS22845 0.28 -0.6 5,592,188 - CA265_RS22845 0.28 +1.2 5,592,208 + CA265_RS22845 0.29 -1.1 5,592,232 - CA265_RS22845 0.30 +0.4 5,592,234 + CA265_RS22845 0.30 -1.4 5,592,329 + CA265_RS22845 0.35 +0.3 5,592,372 + CA265_RS22845 0.38 -0.5 5,592,373 - CA265_RS22845 0.38 +1.0 5,592,416 + CA265_RS22845 0.40 -2.4 5,592,417 - CA265_RS22845 0.40 -0.3 5,592,513 - CA265_RS22845 0.45 +1.0 5,592,558 + CA265_RS22845 0.48 +0.1 5,592,558 + CA265_RS22845 0.48 +0.5 5,592,559 - CA265_RS22845 0.48 +0.4 5,592,580 - CA265_RS22845 0.49 +0.7 5,592,593 + CA265_RS22845 0.49 -0.0
Or see this region's nucleotide sequence