Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS02645

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS02640 and CA265_RS02645 are separated by 42 nucleotidesCA265_RS02645 and CA265_RS02650 are separated by 190 nucleotides CA265_RS02640: CA265_RS02640 - carbohydrate kinase, at 666,465 to 667,850 _RS02640 CA265_RS02645: CA265_RS02645 - transcriptional regulator, at 667,893 to 668,924 _RS02645 CA265_RS02650: CA265_RS02650 - DNA helicase, at 669,115 to 672,501 _RS02650 Position (kb) 667 668 669Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 666.910 kb on + strand, within CA265_RS02640at 666.952 kb on + strand, within CA265_RS02640at 666.952 kb on + strand, within CA265_RS02640at 666.952 kb on + strand, within CA265_RS02640at 666.953 kb on - strand, within CA265_RS02640at 666.953 kb on - strand, within CA265_RS02640at 667.131 kb on - strand, within CA265_RS02640at 667.182 kb on + strand, within CA265_RS02640at 667.210 kb on + strand, within CA265_RS02640at 667.238 kb on + strand, within CA265_RS02640at 667.243 kb on + strand, within CA265_RS02640at 667.243 kb on + strand, within CA265_RS02640at 667.302 kb on + strand, within CA265_RS02640at 667.313 kb on + strand, within CA265_RS02640at 667.340 kb on + strand, within CA265_RS02640at 667.353 kb on + strand, within CA265_RS02640at 667.353 kb on + strand, within CA265_RS02640at 667.407 kb on + strand, within CA265_RS02640at 667.529 kb on - strand, within CA265_RS02640at 667.558 kb on - strand, within CA265_RS02640at 667.672 kb on - strand, within CA265_RS02640at 667.688 kb on + strand, within CA265_RS02640at 667.810 kb on + strandat 667.816 kb on - strandat 667.828 kb on + strandat 667.835 kb on + strandat 667.836 kb on - strandat 667.841 kb on - strandat 667.841 kb on - strandat 667.866 kb on - strandat 667.883 kb on + strandat 667.910 kb on - strandat 667.997 kb on + strand, within CA265_RS02645at 668.133 kb on + strand, within CA265_RS02645at 668.187 kb on - strand, within CA265_RS02645at 668.271 kb on + strand, within CA265_RS02645at 668.271 kb on + strandat 668.452 kb on - strand, within CA265_RS02645at 668.543 kb on + strand, within CA265_RS02645at 668.544 kb on - strandat 668.578 kb on + strand, within CA265_RS02645at 668.610 kb on + strand, within CA265_RS02645at 668.624 kb on + strand, within CA265_RS02645at 668.629 kb on + strand, within CA265_RS02645at 668.630 kb on - strand, within CA265_RS02645at 668.673 kb on + strand, within CA265_RS02645at 668.674 kb on - strand, within CA265_RS02645at 668.758 kb on + strand, within CA265_RS02645at 668.767 kb on - strand, within CA265_RS02645at 668.807 kb on + strand, within CA265_RS02645at 668.807 kb on + strand, within CA265_RS02645at 668.808 kb on - strand, within CA265_RS02645at 668.885 kb on - strandat 668.926 kb on - strandat 668.934 kb on - strandat 668.976 kb on - strandat 669.076 kb on - strandat 669.078 kb on + strandat 669.102 kb on + strandat 669.183 kb on + strandat 669.217 kb on - strandat 669.217 kb on - strandat 669.224 kb on + strandat 669.240 kb on + strandat 669.249 kb on + strandat 669.260 kb on - strandat 669.323 kb on + strandat 669.357 kb on + strandat 669.357 kb on + strandat 669.366 kb on - strandat 669.385 kb on - strandat 669.430 kb on + strandat 669.433 kb on - strandat 669.435 kb on + strandat 669.435 kb on + strandat 669.436 kb on - strandat 669.495 kb on + strand, within CA265_RS02650at 669.495 kb on + strand, within CA265_RS02650at 669.496 kb on - strand, within CA265_RS02650at 669.579 kb on - strand, within CA265_RS02650at 669.579 kb on - strand, within CA265_RS02650at 669.618 kb on + strand, within CA265_RS02650at 669.673 kb on - strand, within CA265_RS02650at 669.752 kb on + strand, within CA265_RS02650at 669.753 kb on - strand, within CA265_RS02650at 669.866 kb on - strand, within CA265_RS02650at 669.895 kb on + strand, within CA265_RS02650at 669.895 kb on + strand, within CA265_RS02650

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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666,910 + CA265_RS02640 0.32 +1.8
666,952 + CA265_RS02640 0.35 -0.6
666,952 + CA265_RS02640 0.35 +0.5
666,952 + CA265_RS02640 0.35 -0.2
666,953 - CA265_RS02640 0.35 -0.3
666,953 - CA265_RS02640 0.35 -1.2
667,131 - CA265_RS02640 0.48 -0.0
667,182 + CA265_RS02640 0.52 -0.2
667,210 + CA265_RS02640 0.54 +1.8
667,238 + CA265_RS02640 0.56 +1.5
667,243 + CA265_RS02640 0.56 +0.3
667,243 + CA265_RS02640 0.56 +0.2
667,302 + CA265_RS02640 0.60 -0.6
667,313 + CA265_RS02640 0.61 -0.4
667,340 + CA265_RS02640 0.63 +0.2
667,353 + CA265_RS02640 0.64 -0.2
667,353 + CA265_RS02640 0.64 +0.5
667,407 + CA265_RS02640 0.68 +0.4
667,529 - CA265_RS02640 0.77 +0.3
667,558 - CA265_RS02640 0.79 -0.7
667,672 - CA265_RS02640 0.87 +0.4
667,688 + CA265_RS02640 0.88 -0.1
667,810 + -0.5
667,816 - +0.2
667,828 + +0.3
667,835 + +0.7
667,836 - +0.9
667,841 - -0.5
667,841 - +0.0
667,866 - -0.1
667,883 + +0.1
667,910 - -0.5
667,997 + CA265_RS02645 0.10 +0.7
668,133 + CA265_RS02645 0.23 -0.4
668,187 - CA265_RS02645 0.28 -0.2
668,271 + CA265_RS02645 0.37 -1.8
668,271 + +1.8
668,452 - CA265_RS02645 0.54 -0.1
668,543 + CA265_RS02645 0.63 -0.3
668,544 - +2.4
668,578 + CA265_RS02645 0.66 -1.2
668,610 + CA265_RS02645 0.69 -0.5
668,624 + CA265_RS02645 0.71 +0.0
668,629 + CA265_RS02645 0.71 +0.1
668,630 - CA265_RS02645 0.71 +0.1
668,673 + CA265_RS02645 0.76 -0.9
668,674 - CA265_RS02645 0.76 -0.4
668,758 + CA265_RS02645 0.84 +1.1
668,767 - CA265_RS02645 0.85 -2.8
668,807 + CA265_RS02645 0.89 -0.6
668,807 + CA265_RS02645 0.89 -1.0
668,808 - CA265_RS02645 0.89 -0.4
668,885 - +0.3
668,926 - -0.6
668,934 - -0.7
668,976 - +0.4
669,076 - +0.0
669,078 + +0.3
669,102 + +0.0
669,183 + +0.3
669,217 - -0.0
669,217 - +0.2
669,224 + +1.7
669,240 + -0.8
669,249 + -0.3
669,260 - -0.4
669,323 + -0.2
669,357 + +1.5
669,357 + -0.6
669,366 - +0.6
669,385 - +1.2
669,430 + +1.9
669,433 - +1.8
669,435 + -0.7
669,435 + -0.2
669,436 - +0.4
669,495 + CA265_RS02650 0.11 +0.2
669,495 + CA265_RS02650 0.11 -1.2
669,496 - CA265_RS02650 0.11 +1.4
669,579 - CA265_RS02650 0.14 -0.2
669,579 - CA265_RS02650 0.14 -0.1
669,618 + CA265_RS02650 0.15 -0.3
669,673 - CA265_RS02650 0.16 +0.8
669,752 + CA265_RS02650 0.19 -0.5
669,753 - CA265_RS02650 0.19 +0.2
669,866 - CA265_RS02650 0.22 -0.0
669,895 + CA265_RS02650 0.23 -0.5
669,895 + CA265_RS02650 0.23 -0.8

Or see this region's nucleotide sequence