Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18670

Experiment: CDM1 without Proline

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CDM1 without Proline
1,975,763	-				+0.5
1,975,770	+				-0.4
1,975,791	-				+0.6
1,975,791	-				+0.7
1,975,816	+				-2.0
1,975,841	-				-0.4
1,975,844	-				-0.2
1,975,853	+				-4.2
1,975,878	-		BBR_RS18665	0.10	-3.8
1,975,886	-		BBR_RS18665	0.11	-2.5
1,975,895	+		BBR_RS18665	0.12	-2.0
1,975,914	+		BBR_RS18665	0.14	-1.4
1,975,918	+		BBR_RS18665	0.15	-2.4
1,975,918	+		BBR_RS18665	0.15	-1.3
1,975,918	+		BBR_RS18665	0.15	-1.8
1,975,921	-		BBR_RS18665	0.15	-1.7
1,975,928	+		BBR_RS18665	0.16	+0.4
1,975,928	+		BBR_RS18665	0.16	-3.8
1,975,928	+		BBR_RS18665	0.16	-0.7
1,975,928	+		BBR_RS18665	0.16	-1.3
1,975,936	-		BBR_RS18665	0.17	-0.3
1,975,936	-		BBR_RS18665	0.17	-1.8
1,975,936	-		BBR_RS18665	0.17	-0.8
1,975,938	-		BBR_RS18665	0.17	-3.2
1,975,951	-		BBR_RS18665	0.18	-1.2
1,975,951	-		BBR_RS18665	0.18	-3.6
1,976,051	+		BBR_RS18665	0.29	-0.1
1,976,058	+		BBR_RS18665	0.29	+0.3
1,976,059	-		BBR_RS18665	0.29	-0.8
1,976,059	-		BBR_RS18665	0.29	-3.4
1,976,066	+		BBR_RS18665	0.30	-0.4
1,976,067	+		BBR_RS18665	0.30	-0.9
1,976,075	-		BBR_RS18665	0.31	-0.9
1,976,100	-		BBR_RS18665	0.34	-0.4
1,976,101	+		BBR_RS18665	0.34	-1.8
1,976,102	+		BBR_RS18665	0.34	-1.2
1,976,104	-		BBR_RS18665	0.34	+0.1
1,976,112	+		BBR_RS18665	0.35	-0.7
1,976,128	-		BBR_RS18665	0.37	-0.4
1,976,128	-		BBR_RS18665	0.37	+0.9
1,976,145	+		BBR_RS18665	0.38	+0.8
1,976,173	-		BBR_RS18665	0.41	+0.6
1,976,175	+		BBR_RS18665	0.42	-2.9
1,976,181	-		BBR_RS18665	0.42	+0.0
1,976,193	-		BBR_RS18665	0.44	-0.7
1,976,200	+		BBR_RS18665	0.44	-1.3
1,976,208	-		BBR_RS18665	0.45	+0.3
1,976,208	-		BBR_RS18665	0.45	+0.2
1,976,210	+		BBR_RS18665	0.45	-0.9
1,976,210	+		BBR_RS18665	0.45	-2.0
1,976,210	+		BBR_RS18665	0.45	-1.9
1,976,218	-		BBR_RS18665	0.46	-0.2
1,976,218	-		BBR_RS18665	0.46	-0.5
1,976,218	-		BBR_RS18665	0.46	-0.7
1,976,218	-		BBR_RS18665	0.46	-1.1
1,976,244	+		BBR_RS18665	0.49	-2.4
1,976,252	-		BBR_RS18665	0.50	-0.3
1,976,252	-		BBR_RS18665	0.50	-2.2
1,976,252	-		BBR_RS18665	0.50	+0.5
1,976,274	+		BBR_RS18665	0.52	+1.1
1,976,274	+		BBR_RS18665	0.52	-1.4
1,976,328	+		BBR_RS18665	0.58	-2.5
1,976,328	+		BBR_RS18665	0.58	-2.4
1,976,329	-		BBR_RS18665	0.58	+0.8
1,976,374	-		BBR_RS18665	0.63	-2.1
1,976,392	-		BBR_RS18665	0.64	-0.4
1,976,394	+		BBR_RS18665	0.65	-1.0
1,976,402	-		BBR_RS18665	0.66	-2.2
1,976,402	-		BBR_RS18665	0.66	-1.3
1,976,433	-		BBR_RS18665	0.69	-0.4
1,976,433	-		BBR_RS18665	0.69	+0.1
1,976,438	+		BBR_RS18665	0.69	+0.5
1,976,438	+		BBR_RS18665	0.69	-0.2
1,976,446	-		BBR_RS18665	0.70	+0.2
1,976,446	-		BBR_RS18665	0.70	+0.1
1,976,446	-		BBR_RS18665	0.70	+0.3
1,976,460	+		BBR_RS18665	0.72	-0.8
1,976,461	+		BBR_RS18665	0.72	-1.6
1,976,461	+		BBR_RS18665	0.72	-3.1
1,976,469	-		BBR_RS18665	0.73	+0.2
1,976,469	-		BBR_RS18665	0.73	-0.1
1,976,469	-		BBR_RS18665	0.73	+0.3
1,976,482	-		BBR_RS18665	0.74	-0.2
1,976,486	+		BBR_RS18665	0.74	-2.0
1,976,494	-		BBR_RS18665	0.75	+0.3
1,976,500	-		BBR_RS18665	0.76	-0.9
1,976,538	+		BBR_RS18665	0.80	-2.4
1,976,538	+		BBR_RS18665	0.80	-3.8
1,976,575	+		BBR_RS18665	0.84	-1.7
1,976,582	-		BBR_RS18665	0.84	+0.2
1,976,597	-		BBR_RS18665	0.86	-0.6
1,976,597	-		BBR_RS18665	0.86	-0.5
1,976,615	-		BBR_RS18665	0.88	-2.6
1,976,662	-				+0.7
1,976,667	-				+0.1
1,976,667	-				-0.6
1,976,667	-				-0.6
1,976,724	+				-0.2
1,976,724	+				-2.7
1,976,730	-				+0.8
1,976,753	-				+0.8
1,976,756	+				-1.3
1,976,757	+				-2.7
1,976,764	-				+0.1
1,976,764	-				-0.5
1,976,764	-				+0.6
1,976,764	-				+0.5
1,976,792	-				-0.1
1,976,815	-				+0.2
1,976,815	-				-2.5
1,976,832	-		BBR_RS18670	0.11	+0.2
1,976,833	+		BBR_RS18670	0.11	+1.0
1,976,833	+		BBR_RS18670	0.11	-2.2
1,976,833	+		BBR_RS18670	0.11	-3.0
1,976,833	+		BBR_RS18670	0.11	-1.4
1,976,833	+		BBR_RS18670	0.11	-2.2
1,976,838	+		BBR_RS18670	0.11	-3.1
1,976,841	-		BBR_RS18670	0.12	-0.8
1,976,841	-		BBR_RS18670	0.12	-0.6
1,976,841	-		BBR_RS18670	0.12	+0.5
1,976,841	-		BBR_RS18670	0.12	-1.5
1,976,841	-		BBR_RS18670	0.12	-0.8
1,976,846	-		BBR_RS18670	0.12	-0.4
1,976,853	-		BBR_RS18670	0.13	-0.3
1,976,853	-		BBR_RS18670	0.13	-0.7
1,976,853	-		BBR_RS18670	0.13	-0.7
1,976,855	+		BBR_RS18670	0.13	-1.3
1,976,858	-		BBR_RS18670	0.13	-1.8
1,976,861	-		BBR_RS18670	0.14	-0.2
1,976,874	+		BBR_RS18670	0.15	-1.9
1,976,885	-		BBR_RS18670	0.16	-0.5
1,976,885	-		BBR_RS18670	0.16	-1.0
1,976,889	+		BBR_RS18670	0.16	-2.5
1,976,908	+		BBR_RS18670	0.18	-1.9
1,976,910	+		BBR_RS18670	0.19	-1.2
1,976,910	+		BBR_RS18670	0.19	-0.1
1,976,910	+		BBR_RS18670	0.19	-0.6
1,976,915	+		BBR_RS18670	0.19	-0.7
1,976,918	-		BBR_RS18670	0.19	-3.3
1,976,918	-		BBR_RS18670	0.19	-1.2
1,976,923	-		BBR_RS18670	0.20	-3.0
1,976,933	+		BBR_RS18670	0.21	-2.4
1,976,935	+		BBR_RS18670	0.21	-0.5
1,976,941	-		BBR_RS18670	0.22	-0.8
1,976,943	-		BBR_RS18670	0.22	+0.4
1,976,943	-		BBR_RS18670	0.22	-0.8
1,976,963	-		BBR_RS18670	0.24	+0.8
1,977,005	-		BBR_RS18670	0.28	+0.0
1,977,017	+		BBR_RS18670	0.30	-0.4
1,977,032	-		BBR_RS18670	0.31	+0.3
1,977,033	-		BBR_RS18670	0.31	+0.2
1,977,033	-		BBR_RS18670	0.31	+0.3
1,977,048	+		BBR_RS18670	0.33	-3.1
1,977,048	+		BBR_RS18670	0.33	-0.7
1,977,048	+		BBR_RS18670	0.33	-0.5
1,977,048	+		BBR_RS18670	0.33	-0.7
1,977,048	+		BBR_RS18670	0.33	-1.6
1,977,048	+		BBR_RS18670	0.33	-1.7
1,977,052	+		BBR_RS18670	0.33	-0.4
1,977,056	-		BBR_RS18670	0.34	+0.8
1,977,056	-		BBR_RS18670	0.34	+0.2
1,977,056	-		BBR_RS18670	0.34	+1.6
1,977,056	-		BBR_RS18670	0.34	-1.0
1,977,059	-		BBR_RS18670	0.34	+1.1
1,977,071	+		BBR_RS18670	0.35	-1.5
1,977,101	+		BBR_RS18670	0.38	-0.5
1,977,109	-		BBR_RS18670	0.39	-1.7
1,977,109	-		BBR_RS18670	0.39	-0.7
1,977,116	+		BBR_RS18670	0.40	-3.4
1,977,123	+		BBR_RS18670	0.41	-2.4
1,977,178	-		BBR_RS18670	0.46	+0.2
1,977,178	-		BBR_RS18670	0.46	-0.8
1,977,190	+		BBR_RS18670	0.47	+1.5
1,977,190	+		BBR_RS18670	0.47	-1.2
1,977,199	-		BBR_RS18670	0.48	+0.9
1,977,199	-		BBR_RS18670	0.48	+0.5
1,977,244	-		BBR_RS18670	0.53	-0.0
1,977,245	-		BBR_RS18670	0.53	-2.9
1,977,246	+		BBR_RS18670	0.53	-1.7
1,977,251	+		BBR_RS18670	0.54	-3.3
1,977,251	+		BBR_RS18670	0.54	-1.6
1,977,260	+		BBR_RS18670	0.55	-0.3
1,977,270	+		BBR_RS18670	0.56	+0.8
1,977,270	+		BBR_RS18670	0.56	-2.8
1,977,275	+		BBR_RS18670	0.56	-1.6
1,977,278	-		BBR_RS18670	0.56	-1.5
1,977,278	-		BBR_RS18670	0.56	+0.7
1,977,278	-		BBR_RS18670	0.56	+0.8
1,977,278	-		BBR_RS18670	0.56	+0.2
1,977,278	-		BBR_RS18670	0.56	-0.8
1,977,301	-		BBR_RS18670	0.59	-0.4
1,977,346	-		BBR_RS18670	0.63	-1.3
1,977,347	-		BBR_RS18670	0.64	-0.3
1,977,382	+		BBR_RS18670	0.67	-0.6
1,977,389	+		BBR_RS18670	0.68	-0.0
1,977,392	-		BBR_RS18670	0.68	-0.1
1,977,392	-		BBR_RS18670	0.68	+0.7
1,977,397	-		BBR_RS18670	0.69	-0.1
1,977,409	-		BBR_RS18670	0.70	+0.5
1,977,409	-		BBR_RS18670	0.70	-1.0
1,977,496	-		BBR_RS18670	0.79	-0.3
1,977,514	+		BBR_RS18670	0.81	-0.9
1,977,514	+		BBR_RS18670	0.81	+1.3
1,977,535	-		BBR_RS18670	0.83	-0.8
1,977,537	+		BBR_RS18670	0.83	-0.8
1,977,586	-		BBR_RS18670	0.88	-1.8
1,977,604	-				-0.9
1,977,604	-				-1.0
1,977,659	+				+0.4
1,977,666	+				-1.2
1,977,672	+				+0.2
1,977,686	+				+1.2
1,977,694	+				+0.1
1,977,770	+				-0.9
1,977,783	-				-0.8
1,977,787	+				+0.9
1,977,788	+				-1.5
1,977,796	-				-0.3
1,977,812	+				-2.3
1,977,839	+				-1.6
1,977,839	-				+0.0
1,977,856	+				-0.1
1,977,879	+				-0.5
1,977,879	+				+0.3
1,977,879	+				+0.3
1,977,882	+				+0.3
1,977,887	-				+1.0
1,977,887	-				+0.1
1,977,887	-				-0.1
1,977,887	-				+0.2
1,977,889	+				+0.6
1,977,889	+				-0.2
1,977,921	-				+0.7
1,977,929	+				-2.8
1,977,937	-				+0.4
1,977,939	+				-1.3
1,977,947	-				+0.8
1,977,947	-				-1.3
1,977,947	-				+0.0
1,977,957	-				+0.2
1,977,959	+				-1.3
1,978,010	+				+0.6
1,978,013	-				+0.0
1,978,039	-		BBR_RS18675	0.11	+0.0
1,978,050	-		BBR_RS18675	0.12	+0.1
1,978,072	+		BBR_RS18675	0.14	-0.3
1,978,072	+		BBR_RS18675	0.14	-1.5
1,978,072	+		BBR_RS18675	0.14	-0.9
1,978,072	+		BBR_RS18675	0.14	-0.4
1,978,080	-		BBR_RS18675	0.14	-0.2
1,978,080	-		BBR_RS18675	0.14	-0.6
1,978,080	-		BBR_RS18675	0.14	+0.3
1,978,080	-		BBR_RS18675	0.14	+0.1
1,978,080	-		BBR_RS18675	0.14	+0.2
1,978,080	-		BBR_RS18675	0.14	-0.1
1,978,080	-		BBR_RS18675	0.14	+1.2
1,978,080	-		BBR_RS18675	0.14	-0.1
1,978,087	+		BBR_RS18675	0.15	+0.4
1,978,109	+		BBR_RS18675	0.17	-1.4
1,978,109	+		BBR_RS18675	0.17	-1.9
1,978,119	+		BBR_RS18675	0.17	-0.6
1,978,119	+		BBR_RS18675	0.17	-0.8
1,978,127	-		BBR_RS18675	0.18	+0.5
1,978,129	+		BBR_RS18675	0.18	-2.7
1,978,129	+		BBR_RS18675	0.18	+0.2
1,978,129	+		BBR_RS18675	0.18	-2.8
1,978,129	+		BBR_RS18675	0.18	-3.4
1,978,129	+		BBR_RS18675	0.18	-1.7
1,978,134	+		BBR_RS18675	0.18	-0.1
1,978,137	-		BBR_RS18675	0.19	+0.2
1,978,137	-		BBR_RS18675	0.19	-1.5
1,978,186	+		BBR_RS18675	0.22	-0.7
1,978,195	-		BBR_RS18675	0.23	-0.2
1,978,201	-		BBR_RS18675	0.24	-0.0
1,978,222	+		BBR_RS18675	0.25	-1.7
1,978,232	-		BBR_RS18675	0.26	-0.4
1,978,240	+		BBR_RS18675	0.26	-2.9
1,978,258	-		BBR_RS18675	0.28	+1.1
1,978,264	-		BBR_RS18675	0.28	-2.1
1,978,264	-		BBR_RS18675	0.28	+0.1
1,978,264	-		BBR_RS18675	0.28	+1.6
1,978,270	-		BBR_RS18675	0.29	+0.7
1,978,273	+		BBR_RS18675	0.29	+1.1
1,978,309	+		BBR_RS18675	0.32	-1.1
1,978,321	-		BBR_RS18675	0.33	-0.6
1,978,336	-		BBR_RS18675	0.34	-0.2
1,978,337	-		BBR_RS18675	0.34	+0.6
1,978,338	+		BBR_RS18675	0.34	+0.7
1,978,342	-		BBR_RS18675	0.34	-0.5
1,978,342	-		BBR_RS18675	0.34	-1.3
1,978,370	-		BBR_RS18675	0.36	+0.6
1,978,398	-		BBR_RS18675	0.38	-0.3
1,978,398	-		BBR_RS18675	0.38	+0.4
1,978,398	-		BBR_RS18675	0.38	-1.3
1,978,407	+		BBR_RS18675	0.39	-0.3
1,978,430	+		BBR_RS18675	0.41	-4.3
1,978,438	-		BBR_RS18675	0.42	+0.3
1,978,438	-		BBR_RS18675	0.42	+0.4
1,978,452	-		BBR_RS18675	0.43	+1.2
1,978,452	-		BBR_RS18675	0.43	-1.0
1,978,457	-		BBR_RS18675	0.43	-1.2
1,978,498	+		BBR_RS18675	0.46	-1.1
1,978,500	-		BBR_RS18675	0.46	+0.2
1,978,506	-		BBR_RS18675	0.47	-0.1
1,978,506	-		BBR_RS18675	0.47	-0.4
1,978,521	-		BBR_RS18675	0.48	+0.5
1,978,528	+		BBR_RS18675	0.48	+0.4
1,978,536	-		BBR_RS18675	0.49	-1.0
1,978,546	+		BBR_RS18675	0.50	-0.9
1,978,546	+		BBR_RS18675	0.50	-3.7
1,978,559	-		BBR_RS18675	0.51	-0.3
1,978,567	+		BBR_RS18675	0.51	-0.8
1,978,570	-		BBR_RS18675	0.52	+0.7
1,978,575	-		BBR_RS18675	0.52	-0.2
1,978,575	-		BBR_RS18675	0.52	+0.7
1,978,575	-		BBR_RS18675	0.52	-0.0
1,978,591	+		BBR_RS18675	0.53	-0.1
1,978,615	+		BBR_RS18675	0.55	-0.8
1,978,624	+		BBR_RS18675	0.56	-3.4
1,978,642	-		BBR_RS18675	0.57	-0.5
1,978,642	-		BBR_RS18675	0.57	-1.2
1,978,652	-		BBR_RS18675	0.58	+0.5
1,978,675	-		BBR_RS18675	0.60	-2.7
1,978,683	-		BBR_RS18675	0.60	-1.5
1,978,683	-		BBR_RS18675	0.60	-2.8