Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13020

Experiment: CDM1 without Proline

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13010 and BBR_RS13015 are separated by 143 nucleotidesBBR_RS13015 and BBR_RS13020 overlap by 4 nucleotidesBBR_RS13020 and BBR_RS13025 are separated by 351 nucleotides BBR_RS13010: BBR_RS13010 - phosphoglucosamine mutase, at 691,532 to 692,917 _RS13010 BBR_RS13015: BBR_RS13015 - peptide deformylase, at 693,061 to 693,714 _RS13015 BBR_RS13020: BBR_RS13020 - DNA polymerase III subunit epsilon, at 693,711 to 695,165 _RS13020 BBR_RS13025: BBR_RS13025 - peptide chain release factor 2, at 695,517 to 696,641 _RS13025 Position (kb) 693 694 695 696Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 692.920 kb on - strandat 692.920 kb on - strandat 692.935 kb on - strandat 692.935 kb on - strandat 692.941 kb on + strandat 692.948 kb on + strandat 692.949 kb on - strandat 692.961 kb on + strandat 692.969 kb on + strandat 692.971 kb on + strandat 692.983 kb on + strandat 692.984 kb on + strandat 692.998 kb on + strandat 693.028 kb on + strandat 693.144 kb on - strand, within BBR_RS13015at 693.144 kb on - strand, within BBR_RS13015at 693.252 kb on - strand, within BBR_RS13015at 693.257 kb on + strand, within BBR_RS13015at 693.280 kb on - strand, within BBR_RS13015at 693.284 kb on - strand, within BBR_RS13015at 693.322 kb on + strand, within BBR_RS13015at 693.330 kb on - strand, within BBR_RS13015at 693.330 kb on - strand, within BBR_RS13015at 693.351 kb on - strand, within BBR_RS13015at 693.395 kb on + strand, within BBR_RS13015at 693.402 kb on + strand, within BBR_RS13015at 693.452 kb on + strand, within BBR_RS13015at 693.462 kb on + strand, within BBR_RS13015at 693.469 kb on - strand, within BBR_RS13015at 693.470 kb on - strand, within BBR_RS13015at 693.470 kb on - strand, within BBR_RS13015at 693.511 kb on + strand, within BBR_RS13015at 693.534 kb on - strand, within BBR_RS13015at 693.551 kb on + strand, within BBR_RS13015at 693.556 kb on + strand, within BBR_RS13015at 693.570 kb on + strand, within BBR_RS13015at 693.570 kb on + strand, within BBR_RS13015at 693.578 kb on + strand, within BBR_RS13015at 693.578 kb on + strand, within BBR_RS13015at 693.583 kb on - strand, within BBR_RS13015at 693.662 kb on - strandat 693.662 kb on - strandat 693.727 kb on + strandat 693.739 kb on + strandat 693.744 kb on + strandat 693.775 kb on + strandat 693.793 kb on + strandat 693.819 kb on - strandat 693.819 kb on - strandat 693.820 kb on + strandat 693.820 kb on + strandat 693.828 kb on - strandat 693.828 kb on - strandat 693.846 kb on - strandat 693.852 kb on + strandat 693.899 kb on + strand, within BBR_RS13020at 693.907 kb on - strand, within BBR_RS13020at 693.927 kb on - strand, within BBR_RS13020at 693.949 kb on - strand, within BBR_RS13020at 694.007 kb on + strand, within BBR_RS13020at 694.007 kb on + strand, within BBR_RS13020at 694.015 kb on - strand, within BBR_RS13020at 694.015 kb on - strand, within BBR_RS13020at 694.029 kb on + strand, within BBR_RS13020at 694.037 kb on + strand, within BBR_RS13020at 694.037 kb on + strand, within BBR_RS13020at 694.087 kb on + strand, within BBR_RS13020at 694.095 kb on - strand, within BBR_RS13020at 694.096 kb on + strand, within BBR_RS13020at 694.129 kb on - strand, within BBR_RS13020at 694.155 kb on + strand, within BBR_RS13020at 694.167 kb on + strand, within BBR_RS13020at 694.167 kb on + strand, within BBR_RS13020at 694.186 kb on - strand, within BBR_RS13020at 694.186 kb on - strand, within BBR_RS13020at 694.207 kb on + strand, within BBR_RS13020at 694.207 kb on + strand, within BBR_RS13020at 694.209 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.230 kb on + strand, within BBR_RS13020at 694.235 kb on + strand, within BBR_RS13020at 694.238 kb on - strand, within BBR_RS13020at 694.238 kb on - strand, within BBR_RS13020at 694.238 kb on - strand, within BBR_RS13020at 694.274 kb on + strand, within BBR_RS13020at 694.274 kb on + strand, within BBR_RS13020at 694.274 kb on + strand, within BBR_RS13020at 694.285 kb on + strand, within BBR_RS13020at 694.288 kb on - strand, within BBR_RS13020at 694.305 kb on + strand, within BBR_RS13020at 694.309 kb on + strand, within BBR_RS13020at 694.324 kb on + strand, within BBR_RS13020at 694.339 kb on - strand, within BBR_RS13020at 694.339 kb on - strand, within BBR_RS13020at 694.350 kb on + strand, within BBR_RS13020at 694.352 kb on + strand, within BBR_RS13020at 694.375 kb on + strand, within BBR_RS13020at 694.390 kb on + strand, within BBR_RS13020at 694.455 kb on - strand, within BBR_RS13020at 694.470 kb on - strand, within BBR_RS13020at 694.577 kb on - strand, within BBR_RS13020at 694.600 kb on + strand, within BBR_RS13020at 694.603 kb on - strand, within BBR_RS13020at 694.618 kb on + strand, within BBR_RS13020at 694.626 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020at 694.653 kb on - strand, within BBR_RS13020at 694.760 kb on + strand, within BBR_RS13020at 694.765 kb on + strand, within BBR_RS13020at 694.794 kb on - strand, within BBR_RS13020at 694.796 kb on + strand, within BBR_RS13020at 694.804 kb on - strand, within BBR_RS13020at 694.819 kb on + strand, within BBR_RS13020at 694.819 kb on - strand, within BBR_RS13020at 694.827 kb on - strand, within BBR_RS13020at 694.834 kb on + strand, within BBR_RS13020at 694.892 kb on + strand, within BBR_RS13020at 694.902 kb on - strand, within BBR_RS13020at 694.904 kb on + strand, within BBR_RS13020at 694.943 kb on - strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.952 kb on + strand, within BBR_RS13020at 694.960 kb on - strand, within BBR_RS13020at 694.969 kb on + strand, within BBR_RS13020at 694.971 kb on + strand, within BBR_RS13020at 694.977 kb on + strand, within BBR_RS13020at 694.977 kb on - strand, within BBR_RS13020at 694.978 kb on - strand, within BBR_RS13020at 694.988 kb on + strand, within BBR_RS13020at 694.988 kb on + strand, within BBR_RS13020at 694.996 kb on - strand, within BBR_RS13020at 694.996 kb on - strand, within BBR_RS13020at 694.996 kb on - strand, within BBR_RS13020at 695.026 kb on + strandat 695.094 kb on - strandat 695.113 kb on - strandat 695.156 kb on + strandat 695.156 kb on + strandat 695.166 kb on + strandat 695.171 kb on + strandat 695.191 kb on + strandat 695.201 kb on + strandat 695.201 kb on + strandat 695.201 kb on + strandat 695.201 kb on + strandat 695.266 kb on + strandat 695.279 kb on - strandat 695.393 kb on + strandat 695.404 kb on + strandat 695.428 kb on + strandat 695.458 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Proline
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692,920 - -2.4
692,920 - -0.4
692,935 - -1.2
692,935 - +0.7
692,941 + +0.5
692,948 + -3.0
692,949 - +0.8
692,961 + -1.8
692,969 + +1.4
692,971 + +0.7
692,983 + -1.1
692,984 + +1.5
692,998 + +0.5
693,028 + +0.2
693,144 - BBR_RS13015 0.13 -0.2
693,144 - BBR_RS13015 0.13 -0.7
693,252 - BBR_RS13015 0.29 +0.1
693,257 + BBR_RS13015 0.30 -2.0
693,280 - BBR_RS13015 0.33 +0.5
693,284 - BBR_RS13015 0.34 -1.7
693,322 + BBR_RS13015 0.40 +2.0
693,330 - BBR_RS13015 0.41 +0.3
693,330 - BBR_RS13015 0.41 +0.3
693,351 - BBR_RS13015 0.44 -0.6
693,395 + BBR_RS13015 0.51 -1.7
693,402 + BBR_RS13015 0.52 -0.5
693,452 + BBR_RS13015 0.60 +0.1
693,462 + BBR_RS13015 0.61 -3.1
693,469 - BBR_RS13015 0.62 +0.8
693,470 - BBR_RS13015 0.63 +1.2
693,470 - BBR_RS13015 0.63 +0.5
693,511 + BBR_RS13015 0.69 -1.9
693,534 - BBR_RS13015 0.72 -1.0
693,551 + BBR_RS13015 0.75 +1.1
693,556 + BBR_RS13015 0.76 -0.1
693,570 + BBR_RS13015 0.78 +0.0
693,570 + BBR_RS13015 0.78 -0.6
693,578 + BBR_RS13015 0.79 +1.1
693,578 + BBR_RS13015 0.79 +1.1
693,583 - BBR_RS13015 0.80 -1.0
693,662 - +0.6
693,662 - +0.9
693,727 + -2.7
693,739 + +0.3
693,744 + +0.5
693,775 + +0.5
693,793 + +1.0
693,819 - -0.9
693,819 - -0.5
693,820 + -3.6
693,820 + +0.5
693,828 - -2.1
693,828 - -1.1
693,846 - +0.4
693,852 + +1.3
693,899 + BBR_RS13020 0.13 +0.8
693,907 - BBR_RS13020 0.13 +1.7
693,927 - BBR_RS13020 0.15 +1.1
693,949 - BBR_RS13020 0.16 -1.1
694,007 + BBR_RS13020 0.20 -3.1
694,007 + BBR_RS13020 0.20 -0.4
694,015 - BBR_RS13020 0.21 -0.3
694,015 - BBR_RS13020 0.21 -1.6
694,029 + BBR_RS13020 0.22 +0.8
694,037 + BBR_RS13020 0.22 -0.0
694,037 + BBR_RS13020 0.22 -1.1
694,087 + BBR_RS13020 0.26 -1.3
694,095 - BBR_RS13020 0.26 -0.5
694,096 + BBR_RS13020 0.26 +0.2
694,129 - BBR_RS13020 0.29 +0.4
694,155 + BBR_RS13020 0.31 -1.1
694,167 + BBR_RS13020 0.31 +1.3
694,167 + BBR_RS13020 0.31 +1.1
694,186 - BBR_RS13020 0.33 +0.3
694,186 - BBR_RS13020 0.33 -1.1
694,207 + BBR_RS13020 0.34 +0.8
694,207 + BBR_RS13020 0.34 +1.7
694,209 + BBR_RS13020 0.34 -0.3
694,230 + BBR_RS13020 0.36 +1.8
694,230 + BBR_RS13020 0.36 +0.0
694,230 + BBR_RS13020 0.36 +0.1
694,230 + BBR_RS13020 0.36 +0.2
694,230 + BBR_RS13020 0.36 -1.3
694,235 + BBR_RS13020 0.36 +0.4
694,238 - BBR_RS13020 0.36 -0.0
694,238 - BBR_RS13020 0.36 -1.3
694,238 - BBR_RS13020 0.36 -2.5
694,274 + BBR_RS13020 0.39 +1.3
694,274 + BBR_RS13020 0.39 -0.2
694,274 + BBR_RS13020 0.39 -0.5
694,285 + BBR_RS13020 0.39 -2.4
694,288 - BBR_RS13020 0.40 -0.4
694,305 + BBR_RS13020 0.41 -0.3
694,309 + BBR_RS13020 0.41 -0.4
694,324 + BBR_RS13020 0.42 +0.1
694,339 - BBR_RS13020 0.43 -0.4
694,339 - BBR_RS13020 0.43 -1.0
694,350 + BBR_RS13020 0.44 +0.8
694,352 + BBR_RS13020 0.44 +0.3
694,375 + BBR_RS13020 0.46 -0.1
694,390 + BBR_RS13020 0.47 +1.0
694,455 - BBR_RS13020 0.51 +0.1
694,470 - BBR_RS13020 0.52 -1.2
694,577 - BBR_RS13020 0.60 -0.9
694,600 + BBR_RS13020 0.61 +0.3
694,603 - BBR_RS13020 0.61 -1.1
694,618 + BBR_RS13020 0.62 +0.5
694,626 - BBR_RS13020 0.63 -0.2
694,653 - BBR_RS13020 0.65 -0.2
694,653 - BBR_RS13020 0.65 -1.1
694,653 - BBR_RS13020 0.65 -0.5
694,760 + BBR_RS13020 0.72 +0.2
694,765 + BBR_RS13020 0.72 -0.2
694,794 - BBR_RS13020 0.74 -1.0
694,796 + BBR_RS13020 0.75 +0.8
694,804 - BBR_RS13020 0.75 -1.7
694,819 + BBR_RS13020 0.76 +0.5
694,819 - BBR_RS13020 0.76 +0.3
694,827 - BBR_RS13020 0.77 -1.4
694,834 + BBR_RS13020 0.77 -0.7
694,892 + BBR_RS13020 0.81 -1.0
694,902 - BBR_RS13020 0.82 -0.4
694,904 + BBR_RS13020 0.82 -0.1
694,943 - BBR_RS13020 0.85 -0.8
694,952 + BBR_RS13020 0.85 +1.5
694,952 + BBR_RS13020 0.85 +0.2
694,952 + BBR_RS13020 0.85 -1.6
694,952 + BBR_RS13020 0.85 +0.6
694,952 + BBR_RS13020 0.85 +0.1
694,952 + BBR_RS13020 0.85 -0.5
694,952 + BBR_RS13020 0.85 -0.6
694,960 - BBR_RS13020 0.86 -1.2
694,969 + BBR_RS13020 0.86 +0.3
694,971 + BBR_RS13020 0.87 +0.2
694,977 + BBR_RS13020 0.87 +1.9
694,977 - BBR_RS13020 0.87 +0.0
694,978 - BBR_RS13020 0.87 +0.4
694,988 + BBR_RS13020 0.88 -1.2
694,988 + BBR_RS13020 0.88 -1.0
694,996 - BBR_RS13020 0.88 -1.1
694,996 - BBR_RS13020 0.88 -0.2
694,996 - BBR_RS13020 0.88 +0.5
695,026 + -0.9
695,094 - -2.9
695,113 - +0.4
695,156 + +1.0
695,156 + +1.4
695,166 + -0.0
695,171 + -2.2
695,191 + -1.0
695,201 + +1.0
695,201 + -0.1
695,201 + -1.4
695,201 + -1.1
695,266 + -2.0
695,279 - +0.3
695,393 + +1.2
695,404 + +0.4
695,428 + -0.5
695,458 + +0.0

Or see this region's nucleotide sequence