Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04403 and SMc04404 are separated by 85 nucleotides SMc04404 and SMc04405 are separated by 172 nucleotides
SMc04403: SMc04403 - peptidyl-dipeptidase A protein, at 3,608,819 to 3,610,882
SMc04403
SMc04404: SMc04404 - amino acid efflux transmembrane protein, at 3,610,968 to 3,611,609
SMc04404
SMc04405: SMc04405 - 3-isopropylmalate dehydrogenase, at 3,611,782 to 3,612,894
SMc04405
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-1
0
1 at 3610.224 kb on + strand, within SMc04403 at 3610.224 kb on + strand, within SMc04403 at 3610.224 kb on + strand, within SMc04403 at 3610.225 kb on - strand, within SMc04403 at 3610.225 kb on - strand, within SMc04403 at 3610.228 kb on + strand, within SMc04403 at 3610.228 kb on + strand, within SMc04403 at 3610.228 kb on + strand, within SMc04403 at 3610.917 kb on + strand at 3610.917 kb on + strand at 3611.112 kb on - strand, within SMc04404 at 3611.863 kb on + strand at 3611.864 kb on - strand at 3611.961 kb on + strand, within SMc04405 at 3612.034 kb on + strand, within SMc04405 at 3612.205 kb on + strand, within SMc04405 at 3612.205 kb on + strand, within SMc04405 at 3612.206 kb on - strand, within SMc04405 at 3612.274 kb on + strand, within SMc04405 at 3612.275 kb on - strand, within SMc04405 at 3612.275 kb on - strand, within SMc04405 at 3612.283 kb on + strand, within SMc04405
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,610,224 + SMc04403 0.68 -0.0 3,610,224 + SMc04403 0.68 -0.3 3,610,224 + SMc04403 0.68 +0.7 3,610,225 - SMc04403 0.68 +0.2 3,610,225 - SMc04403 0.68 +1.0 3,610,228 + SMc04403 0.68 +0.1 3,610,228 + SMc04403 0.68 -0.5 3,610,228 + SMc04403 0.68 +0.5 3,610,917 + -0.0 3,610,917 + -0.4 3,611,112 - SMc04404 0.22 -0.9 3,611,863 + -1.2 3,611,864 - -0.4 3,611,961 + SMc04405 0.16 +0.1 3,612,034 + SMc04405 0.23 -0.4 3,612,205 + SMc04405 0.38 -0.1 3,612,205 + SMc04405 0.38 -0.9 3,612,206 - SMc04405 0.38 -0.3 3,612,274 + SMc04405 0.44 -1.1 3,612,275 - SMc04405 0.44 -0.4 3,612,275 - SMc04405 0.44 -0.5 3,612,283 + SMc04405 0.45 +0.6
Or see this region's nucleotide sequence