Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04138 and SMc04137 are separated by 22 nucleotides SMc04137 and SMc04136 overlap by 8 nucleotides SMc04136 and SMc04135 are separated by 14 nucleotides
SMc04138: SMc04138 - oxidoreductase, at 133,661 to 134,677
SMc04138
SMc04137: SMc04137 - ABC transporter permease, at 134,700 to 135,587
SMc04137
SMc04136: SMc04136 - ABC transporter permease, at 135,580 to 136,527
SMc04136
SMc04135: SMc04135 - periplasmic binding ABC transporter protein, at 136,542 to 137,825
SMc04135
Position (kb) 135
136
137 Strain fitness (log2 ratio) -2
-1
0
1
2 at 134.628 kb on + strand at 134.628 kb on + strand at 134.629 kb on - strand at 134.866 kb on + strand, within SMc04137 at 134.866 kb on + strand, within SMc04137 at 134.867 kb on - strand, within SMc04137 at 134.887 kb on + strand, within SMc04137 at 135.043 kb on - strand, within SMc04137 at 135.158 kb on - strand, within SMc04137 at 135.158 kb on - strand, within SMc04137 at 135.182 kb on - strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.256 kb on + strand, within SMc04137 at 135.370 kb on + strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.371 kb on - strand, within SMc04137 at 135.467 kb on - strand, within SMc04137 at 135.590 kb on + strand at 135.590 kb on + strand at 135.591 kb on - strand at 135.716 kb on + strand, within SMc04136 at 135.725 kb on + strand, within SMc04136 at 135.864 kb on - strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.908 kb on + strand, within SMc04136 at 135.909 kb on - strand, within SMc04136 at 136.004 kb on + strand, within SMc04136 at 136.004 kb on + strand, within SMc04136 at 136.005 kb on - strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.139 kb on + strand, within SMc04136 at 136.241 kb on + strand, within SMc04136 at 136.241 kb on + strand, within SMc04136 at 136.242 kb on - strand, within SMc04136 at 136.302 kb on - strand, within SMc04136 at 136.302 kb on - strand, within SMc04136 at 136.361 kb on + strand, within SMc04136 at 136.361 kb on + strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.362 kb on - strand, within SMc04136 at 136.454 kb on - strand at 136.544 kb on - strand at 136.721 kb on - strand, within SMc04135 at 136.721 kb on - strand, within SMc04135 at 136.852 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.068 kb on + strand, within SMc04135 at 137.120 kb on - strand, within SMc04135 at 137.260 kb on + strand, within SMc04135 at 137.260 kb on + strand, within SMc04135 at 137.261 kb on - strand, within SMc04135
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 134,628 + +0.1 134,628 + -0.7 134,629 - +0.5 134,866 + SMc04137 0.19 +0.1 134,866 + SMc04137 0.19 -0.5 134,867 - SMc04137 0.19 +0.5 134,887 + SMc04137 0.21 +2.0 135,043 - SMc04137 0.39 +0.2 135,158 - SMc04137 0.52 -0.2 135,158 - SMc04137 0.52 -1.0 135,182 - SMc04137 0.54 -0.3 135,256 + SMc04137 0.63 +0.0 135,256 + SMc04137 0.63 +0.0 135,256 + SMc04137 0.63 +0.4 135,256 + SMc04137 0.63 -0.6 135,256 + SMc04137 0.63 +0.6 135,256 + SMc04137 0.63 -0.5 135,370 + SMc04137 0.75 -0.3 135,371 - SMc04137 0.76 -0.4 135,371 - SMc04137 0.76 -1.0 135,371 - SMc04137 0.76 +0.0 135,467 - SMc04137 0.86 -0.3 135,590 + +0.8 135,590 + +0.9 135,591 - -0.0 135,716 + SMc04136 0.14 -0.5 135,725 + SMc04136 0.15 -0.1 135,864 - SMc04136 0.30 -0.2 135,908 + SMc04136 0.35 -0.4 135,908 + SMc04136 0.35 -0.6 135,908 + SMc04136 0.35 -0.2 135,909 - SMc04136 0.35 -0.1 136,004 + SMc04136 0.45 +0.7 136,004 + SMc04136 0.45 -0.9 136,005 - SMc04136 0.45 -0.1 136,139 + SMc04136 0.59 -2.1 136,139 + SMc04136 0.59 +0.5 136,139 + SMc04136 0.59 -1.2 136,241 + SMc04136 0.70 -0.8 136,241 + SMc04136 0.70 -0.8 136,242 - SMc04136 0.70 -0.4 136,302 - SMc04136 0.76 -0.4 136,302 - SMc04136 0.76 -2.0 136,361 + SMc04136 0.82 -1.4 136,361 + SMc04136 0.82 +0.1 136,362 - SMc04136 0.82 -0.0 136,362 - SMc04136 0.82 -0.6 136,362 - SMc04136 0.82 -0.3 136,454 - +0.1 136,544 - +0.2 136,721 - SMc04135 0.14 -0.2 136,721 - SMc04135 0.14 +0.4 136,852 + SMc04135 0.24 -0.6 137,068 + SMc04135 0.41 +0.3 137,068 + SMc04135 0.41 +0.1 137,068 + SMc04135 0.41 -1.1 137,120 - SMc04135 0.45 +0.3 137,260 + SMc04135 0.56 -0.1 137,260 + SMc04135 0.56 -0.0 137,261 - SMc04135 0.56 -0.0
Or see this region's nucleotide sequence