Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04122 and SMc04121 are separated by 103 nucleotides SMc04121 and SMc04120 are separated by 110 nucleotides
SMc04122: SMc04122 - thymidine phosphorylase, at 152,705 to 154,027
SMc04122
SMc04121: SMc04121 - uracil phosphoribosyltransferase, at 154,131 to 154,760
SMc04121
SMc04120: SMc04120 - adenosine deaminase, at 154,871 to 155,845
SMc04120
Position (kb) 154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 153.204 kb on - strand, within SMc04122 at 153.204 kb on - strand, within SMc04122 at 153.289 kb on - strand, within SMc04122 at 153.486 kb on - strand, within SMc04122 at 153.486 kb on - strand, within SMc04122 at 153.566 kb on - strand, within SMc04122 at 153.698 kb on + strand, within SMc04122 at 153.698 kb on + strand, within SMc04122 at 153.698 kb on + strand, within SMc04122 at 153.749 kb on + strand, within SMc04122 at 153.962 kb on + strand at 153.963 kb on - strand at 154.030 kb on - strand at 154.067 kb on + strand at 154.132 kb on + strand at 154.133 kb on - strand at 154.144 kb on + strand at 154.144 kb on + strand at 154.145 kb on - strand at 154.145 kb on - strand at 154.182 kb on - strand at 154.420 kb on + strand, within SMc04121 at 154.420 kb on + strand, within SMc04121 at 154.873 kb on - strand at 154.880 kb on + strand at 154.880 kb on + strand at 154.881 kb on - strand at 154.999 kb on - strand, within SMc04120 at 155.409 kb on + strand, within SMc04120 at 155.528 kb on - strand, within SMc04120 at 155.529 kb on + strand, within SMc04120 at 155.529 kb on + strand, within SMc04120 at 155.590 kb on - strand, within SMc04120 at 155.596 kb on + strand, within SMc04120 at 155.622 kb on + strand, within SMc04120 at 155.622 kb on + strand, within SMc04120 at 155.623 kb on - strand, within SMc04120 at 155.643 kb on + strand, within SMc04120 at 155.682 kb on + strand, within SMc04120 at 155.718 kb on + strand, within SMc04120 at 155.719 kb on - strand, within SMc04120 at 155.719 kb on - strand, within SMc04120
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 153,204 - SMc04122 0.38 -1.3 153,204 - SMc04122 0.38 -0.0 153,289 - SMc04122 0.44 -0.4 153,486 - SMc04122 0.59 +0.6 153,486 - SMc04122 0.59 -0.1 153,566 - SMc04122 0.65 -0.1 153,698 + SMc04122 0.75 +0.6 153,698 + SMc04122 0.75 +0.3 153,698 + SMc04122 0.75 +0.4 153,749 + SMc04122 0.79 -1.7 153,962 + -0.1 153,963 - +0.2 154,030 - +0.8 154,067 + +0.1 154,132 + -0.2 154,133 - +1.9 154,144 + -3.5 154,144 + -1.2 154,145 - -1.8 154,145 - -1.5 154,182 - -1.0 154,420 + SMc04121 0.46 -1.9 154,420 + SMc04121 0.46 -1.4 154,873 - -0.3 154,880 + +0.4 154,880 + -0.1 154,881 - +0.2 154,999 - SMc04120 0.13 +2.3 155,409 + SMc04120 0.55 -0.9 155,528 - SMc04120 0.67 -0.1 155,529 + SMc04120 0.67 +0.2 155,529 + SMc04120 0.67 +1.6 155,590 - SMc04120 0.74 +1.2 155,596 + SMc04120 0.74 +0.4 155,622 + SMc04120 0.77 +0.8 155,622 + SMc04120 0.77 -0.4 155,623 - SMc04120 0.77 -0.5 155,643 + SMc04120 0.79 +3.5 155,682 + SMc04120 0.83 +0.4 155,718 + SMc04120 0.87 +0.8 155,719 - SMc04120 0.87 -0.8 155,719 - SMc04120 0.87 +1.0
Or see this region's nucleotide sequence