Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04089 and SMc04090 are separated by 167 nucleotides SMc04090 and SMc04091 overlap by 1 nucleotides
SMc04089: SMc04089 - hypothetical protein, at 3,629,899 to 3,631,584
SMc04089
SMc04090: SMc04090 - sun protein, at 3,631,752 to 3,633,164
SMc04090
SMc04091: SMc04091 - heat shock protein HtpX, at 3,633,164 to 3,634,123
SMc04091
Position (kb)
3631
3632
3633
3634 Strain fitness (log2 ratio)
-2
-1
0
1 at 3631.665 kb on - strand at 3631.665 kb on - strand at 3631.665 kb on - strand at 3631.673 kb on - strand at 3631.694 kb on - strand at 3631.783 kb on + strand at 3632.015 kb on + strand, within SMc04090 at 3632.547 kb on + strand, within SMc04090 at 3632.590 kb on + strand, within SMc04090 at 3632.882 kb on + strand, within SMc04090 at 3632.957 kb on - strand, within SMc04090 at 3633.150 kb on - strand at 3633.247 kb on + strand at 3633.388 kb on + strand, within SMc04091 at 3633.388 kb on + strand, within SMc04091 at 3633.388 kb on + strand, within SMc04091 at 3633.389 kb on - strand, within SMc04091 at 3633.492 kb on - strand, within SMc04091 at 3633.492 kb on - strand, within SMc04091 at 3633.520 kb on - strand, within SMc04091 at 3633.529 kb on + strand, within SMc04091 at 3633.529 kb on + strand, within SMc04091 at 3633.530 kb on - strand, within SMc04091 at 3633.549 kb on - strand, within SMc04091 at 3633.762 kb on + strand, within SMc04091 at 3633.916 kb on - strand, within SMc04091 at 3633.919 kb on - strand, within SMc04091 at 3634.059 kb on + strand at 3634.060 kb on - strand at 3634.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,631,665 - -0.6 3,631,665 - +0.6 3,631,665 - +0.6 3,631,673 - +0.1 3,631,694 - -0.0 3,631,783 + +0.1 3,632,015 + SMc04090 0.19 -0.1 3,632,547 + SMc04090 0.56 -1.0 3,632,590 + SMc04090 0.59 -0.6 3,632,882 + SMc04090 0.80 -1.1 3,632,957 - SMc04090 0.85 -1.3 3,633,150 - -0.1 3,633,247 + +0.6 3,633,388 + SMc04091 0.23 +1.2 3,633,388 + SMc04091 0.23 -0.1 3,633,388 + SMc04091 0.23 -0.3 3,633,389 - SMc04091 0.23 -1.1 3,633,492 - SMc04091 0.34 -0.6 3,633,492 - SMc04091 0.34 +0.8 3,633,520 - SMc04091 0.37 -0.1 3,633,529 + SMc04091 0.38 -0.4 3,633,529 + SMc04091 0.38 -0.3 3,633,530 - SMc04091 0.38 -1.2 3,633,549 - SMc04091 0.40 -0.2 3,633,762 + SMc04091 0.62 -0.9 3,633,916 - SMc04091 0.78 +0.0 3,633,919 - SMc04091 0.79 -1.9 3,634,059 + -0.6 3,634,060 - -0.1 3,634,060 - -1.6
Or see this region's nucleotide sequence