Strain Fitness in Sinorhizobium meliloti 1021 around SMc03967

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03965 and SMc03966 are separated by 171 nucleotidesSMc03966 and SMc03967 are separated by 74 nucleotidesSMc03967 and SMc03968 are separated by 168 nucleotides SMc03965: SMc03965 - Holliday junction DNA helicase RuvB, at 2,958,876 to 2,959,916 SMc03965 SMc03966: SMc03966 - Holliday junction DNA helicase RuvA, at 2,960,088 to 2,960,705 SMc03966 SMc03967: SMc03967 - Holliday junction resolvase, at 2,960,780 to 2,961,292 SMc03967 SMc03968: SMc03968 - oxidoreductase, at 2,961,461 to 2,962,450 SMc03968 Position (kb) 2960 2961 2962Strain fitness (log2 ratio) -3 -2 -1 0 1at 2959.950 kb on + strandat 2960.046 kb on + strandat 2960.551 kb on + strand, within SMc03966at 2960.765 kb on - strandat 2960.911 kb on + strand, within SMc03967at 2960.911 kb on + strand, within SMc03967at 2960.911 kb on + strand, within SMc03967at 2961.420 kb on - strandat 2962.059 kb on + strand, within SMc03968at 2962.059 kb on + strand, within SMc03968at 2962.060 kb on - strand, within SMc03968at 2962.060 kb on - strand, within SMc03968at 2962.060 kb on - strand, within SMc03968at 2962.292 kb on + strand, within SMc03968

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,959,950 + -1.5
2,960,046 + -1.7
2,960,551 + SMc03966 0.75 -0.5
2,960,765 - -0.3
2,960,911 + SMc03967 0.26 -2.8
2,960,911 + SMc03967 0.26 -1.1
2,960,911 + SMc03967 0.26 -1.4
2,961,420 - -0.5
2,962,059 + SMc03968 0.60 +0.6
2,962,059 + SMc03968 0.60 +0.1
2,962,060 - SMc03968 0.61 +1.1
2,962,060 - SMc03968 0.61 +0.4
2,962,060 - SMc03968 0.61 -0.9
2,962,292 + SMc03968 0.84 -2.0

Or see this region's nucleotide sequence