Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03929 and SMc03930 are separated by 195 nucleotides SMc03930 and SMc03931 overlap by 8 nucleotides
SMc03929: SMc03929 - zinc-type alcohol dehydrogenase transmembrane protein, at 3,078,322 to 3,079,497
SMc03929
SMc03930: SMc03930 - sarcosine oxidase subunit gamma, at 3,079,693 to 3,080,247
SMc03930
SMc03931: SMc03931 - sarcosine oxidase subunit alpha, at 3,080,240 to 3,083,233
SMc03931
Position (kb)
3079
3080
3081 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3078.787 kb on - strand, within SMc03929 at 3078.886 kb on - strand, within SMc03929 at 3079.077 kb on + strand, within SMc03929 at 3079.078 kb on - strand, within SMc03929 at 3079.078 kb on - strand, within SMc03929 at 3079.078 kb on - strand, within SMc03929 at 3079.390 kb on - strand at 3079.397 kb on + strand at 3079.398 kb on - strand at 3079.398 kb on - strand at 3079.590 kb on + strand at 3079.590 kb on + strand at 3079.590 kb on + strand at 3079.593 kb on + strand at 3079.593 kb on + strand at 3079.776 kb on + strand, within SMc03930 at 3080.325 kb on + strand at 3080.326 kb on - strand at 3080.326 kb on - strand at 3080.326 kb on - strand at 3080.403 kb on + strand at 3080.403 kb on + strand at 3080.641 kb on + strand, within SMc03931 at 3080.662 kb on - strand, within SMc03931 at 3080.864 kb on - strand, within SMc03931 at 3081.012 kb on + strand, within SMc03931 at 3081.012 kb on + strand, within SMc03931 at 3081.012 kb on + strand, within SMc03931 at 3081.013 kb on - strand, within SMc03931 at 3081.183 kb on + strand, within SMc03931 at 3081.183 kb on + strand, within SMc03931 at 3081.183 kb on + strand, within SMc03931 at 3081.184 kb on - strand, within SMc03931 at 3081.184 kb on - strand, within SMc03931 at 3081.184 kb on - strand, within SMc03931
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,078,787 - SMc03929 0.40 -1.3 3,078,886 - SMc03929 0.48 +0.3 3,079,077 + SMc03929 0.64 -0.4 3,079,078 - SMc03929 0.64 -0.5 3,079,078 - SMc03929 0.64 -0.5 3,079,078 - SMc03929 0.64 -0.2 3,079,390 - +0.3 3,079,397 + +0.6 3,079,398 - +1.4 3,079,398 - -0.0 3,079,590 + +0.6 3,079,590 + -0.2 3,079,590 + +0.1 3,079,593 + +0.9 3,079,593 + +0.5 3,079,776 + SMc03930 0.15 +2.0 3,080,325 + +2.6 3,080,326 - +2.3 3,080,326 - +3.1 3,080,326 - +1.6 3,080,403 + +2.2 3,080,403 + +1.8 3,080,641 + SMc03931 0.13 +4.0 3,080,662 - SMc03931 0.14 +2.0 3,080,864 - SMc03931 0.21 +2.0 3,081,012 + SMc03931 0.26 +2.2 3,081,012 + SMc03931 0.26 +2.0 3,081,012 + SMc03931 0.26 +2.2 3,081,013 - SMc03931 0.26 +1.6 3,081,183 + SMc03931 0.31 +2.3 3,081,183 + SMc03931 0.31 +1.8 3,081,183 + SMc03931 0.31 +1.5 3,081,184 - SMc03931 0.32 +2.2 3,081,184 - SMc03931 0.32 +2.8 3,081,184 - SMc03931 0.32 +1.7
Or see this region's nucleotide sequence