Strain Fitness in Sinorhizobium meliloti 1021 around SMc03876

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03875 and SMc03876 are separated by 384 nucleotidesSMc03876 and SMc03877 are separated by 315 nucleotides SMc03875: SMc03875 - ferredoxin protein, at 3,540,776 to 3,541,114 SMc03875 SMc03876: SMc03876 - HEAT shock-like protein, at 3,541,499 to 3,541,930 SMc03876 SMc03877: SMc03877 - hypothetical protein, at 3,542,246 to 3,545,026 SMc03877 Position (kb) 3541 3542Strain fitness (log2 ratio) -1 0 1 2at 3540.530 kb on - strandat 3540.530 kb on - strandat 3541.189 kb on - strandat 3541.354 kb on - strandat 3541.473 kb on - strandat 3541.684 kb on - strand, within SMc03876at 3541.746 kb on - strand, within SMc03876at 3541.827 kb on - strand, within SMc03876at 3542.697 kb on + strand, within SMc03877

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,540,530 - +1.4
3,540,530 - +2.4
3,541,189 - +0.0
3,541,354 - -0.6
3,541,473 - +0.4
3,541,684 - SMc03876 0.43 -0.8
3,541,746 - SMc03876 0.57 -1.5
3,541,827 - SMc03876 0.76 -1.1
3,542,697 + SMc03877 0.16 +0.2

Or see this region's nucleotide sequence