Strain Fitness in Sinorhizobium meliloti 1021 around SMc03864

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03862 and SMc03863 are separated by 332 nucleotidesSMc03863 and SMc03864 are separated by 126 nucleotidesSMc03864 and SMc03865 are separated by 69 nucleotidesSMc03865 and SMc03866 are separated by 50 nucleotides SMc03862: SMc03862 - hypothetical protein, at 3,526,182 to 3,526,928 SMc03862 SMc03863: SMc03863 - 50S ribosomal protein L19, at 3,527,261 to 3,527,794 SMc03863 SMc03864: SMc03864 - amino acid-binding periplasmic (signal peptide) ABC transporter protein, at 3,527,921 to 3,528,730 SMc03864 SMc03865: SMc03865 - amino-acid transport system permease ABC transporter protein, at 3,528,800 to 3,529,621 SMc03865 SMc03866: SMc03866 - ABC transporter ATP-binding protein, at 3,529,672 to 3,531,513 SMc03866 Position (kb) 3527 3528 3529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3526.992 kb on - strandat 3526.992 kb on - strandat 3527.568 kb on - strand, within SMc03863at 3527.605 kb on - strand, within SMc03863at 3527.875 kb on + strandat 3528.278 kb on + strand, within SMc03864at 3528.278 kb on + strand, within SMc03864at 3528.279 kb on - strand, within SMc03864at 3528.279 kb on - strand, within SMc03864at 3528.280 kb on + strand, within SMc03864at 3528.281 kb on - strand, within SMc03864at 3528.398 kb on + strand, within SMc03864at 3528.399 kb on - strand, within SMc03864at 3528.410 kb on + strand, within SMc03864at 3528.539 kb on + strand, within SMc03864at 3528.539 kb on + strand, within SMc03864at 3528.540 kb on - strand, within SMc03864at 3528.745 kb on + strandat 3528.911 kb on - strand, within SMc03865at 3528.911 kb on - strand, within SMc03865at 3528.911 kb on - strand, within SMc03865at 3528.924 kb on + strand, within SMc03865at 3528.925 kb on - strand, within SMc03865at 3528.925 kb on - strand, within SMc03865at 3529.064 kb on + strand, within SMc03865at 3529.065 kb on - strand, within SMc03865at 3529.065 kb on - strand, within SMc03865at 3529.087 kb on - strand, within SMc03865at 3529.109 kb on + strand, within SMc03865at 3529.109 kb on + strand, within SMc03865at 3529.110 kb on - strand, within SMc03865at 3529.347 kb on - strand, within SMc03865at 3529.347 kb on - strand, within SMc03865at 3529.490 kb on + strand, within SMc03865at 3529.490 kb on + strand, within SMc03865at 3529.490 kb on + strand, within SMc03865at 3529.491 kb on - strand, within SMc03865at 3529.491 kb on - strand, within SMc03865at 3529.491 kb on - strand, within SMc03865at 3529.524 kb on - strand, within SMc03865at 3529.524 kb on - strand, within SMc03865at 3529.524 kb on - strand, within SMc03865at 3529.538 kb on + strand, within SMc03865at 3529.539 kb on - strandat 3529.539 kb on - strandat 3529.544 kb on + strandat 3529.545 kb on - strandat 3529.545 kb on - strandat 3529.619 kb on + strandat 3529.620 kb on - strandat 3529.650 kb on + strandat 3529.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,526,992 - +0.1
3,526,992 - -0.6
3,527,568 - SMc03863 0.57 +4.9
3,527,605 - SMc03863 0.64 +2.4
3,527,875 + -0.4
3,528,278 + SMc03864 0.44 -0.8
3,528,278 + SMc03864 0.44 -0.4
3,528,279 - SMc03864 0.44 -3.1
3,528,279 - SMc03864 0.44 -0.7
3,528,280 + SMc03864 0.44 -0.2
3,528,281 - SMc03864 0.44 -1.0
3,528,398 + SMc03864 0.59 +0.2
3,528,399 - SMc03864 0.59 -0.8
3,528,410 + SMc03864 0.60 -0.9
3,528,539 + SMc03864 0.76 -0.7
3,528,539 + SMc03864 0.76 -0.5
3,528,540 - SMc03864 0.76 -1.1
3,528,745 + +0.6
3,528,911 - SMc03865 0.14 -0.7
3,528,911 - SMc03865 0.14 +0.6
3,528,911 - SMc03865 0.14 -0.7
3,528,924 + SMc03865 0.15 +0.2
3,528,925 - SMc03865 0.15 -0.2
3,528,925 - SMc03865 0.15 -0.5
3,529,064 + SMc03865 0.32 -0.1
3,529,065 - SMc03865 0.32 -0.7
3,529,065 - SMc03865 0.32 +0.0
3,529,087 - SMc03865 0.35 -0.3
3,529,109 + SMc03865 0.38 +1.9
3,529,109 + SMc03865 0.38 -0.3
3,529,110 - SMc03865 0.38 -2.1
3,529,347 - SMc03865 0.67 -1.0
3,529,347 - SMc03865 0.67 -0.6
3,529,490 + SMc03865 0.84 -1.1
3,529,490 + SMc03865 0.84 +0.2
3,529,490 + SMc03865 0.84 -0.6
3,529,491 - SMc03865 0.84 +0.0
3,529,491 - SMc03865 0.84 +0.4
3,529,491 - SMc03865 0.84 -0.1
3,529,524 - SMc03865 0.88 +1.2
3,529,524 - SMc03865 0.88 -0.1
3,529,524 - SMc03865 0.88 -0.3
3,529,538 + SMc03865 0.90 -1.1
3,529,539 - -1.2
3,529,539 - +0.9
3,529,544 + -0.3
3,529,545 - -0.6
3,529,545 - -0.1
3,529,619 + -1.7
3,529,620 - -0.1
3,529,650 + +0.2
3,529,650 + +0.3

Or see this region's nucleotide sequence