Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03809 and SMc03810 are separated by 211 nucleotides SMc03810 and SMc03811 overlap by 4 nucleotides SMc03811 and SMc03812 overlap by 1 nucleotides
SMc03809: SMc03809 - hypothetical protein, at 3,476,072 to 3,476,734
SMc03809
SMc03810: SMc03810 - hypothetical protein, at 3,476,946 to 3,477,755
SMc03810
SMc03811: SMc03811 - hypothetical protein, at 3,477,752 to 3,478,582
SMc03811
SMc03812: SMc03812 - oxidoreductase, at 3,478,582 to 3,479,658
SMc03812
Position (kb)
3476
3477
3478 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3476.810 kb on - strand at 3476.959 kb on + strand at 3477.001 kb on + strand at 3477.365 kb on + strand, within SMc03810 at 3477.366 kb on - strand, within SMc03810 at 3477.518 kb on - strand, within SMc03810 at 3477.871 kb on - strand, within SMc03811 at 3477.880 kb on - strand, within SMc03811 at 3478.368 kb on + strand, within SMc03811 at 3478.368 kb on + strand, within SMc03811 at 3478.369 kb on - strand, within SMc03811 at 3478.369 kb on - strand, within SMc03811 at 3478.748 kb on + strand, within SMc03812 at 3478.749 kb on - strand, within SMc03812 at 3478.749 kb on - strand, within SMc03812
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,476,810 - -2.7 3,476,959 + -0.3 3,477,001 + +0.3 3,477,365 + SMc03810 0.52 -1.4 3,477,366 - SMc03810 0.52 -0.4 3,477,518 - SMc03810 0.71 -0.6 3,477,871 - SMc03811 0.14 +0.4 3,477,880 - SMc03811 0.15 -0.3 3,478,368 + SMc03811 0.74 +1.7 3,478,368 + SMc03811 0.74 +0.2 3,478,369 - SMc03811 0.74 +3.5 3,478,369 - SMc03811 0.74 -0.3 3,478,748 + SMc03812 0.15 +0.0 3,478,749 - SMc03812 0.16 -0.8 3,478,749 - SMc03812 0.16 -0.4
Or see this region's nucleotide sequence