Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03298 and SMc03300 are separated by 75 nucleotides SMc03300 and SMc03301 overlap by 4 nucleotides
SMc03298: SMc03298 - transposase number 3 for insertion sequence ISRM26, at 3,413,617 to 3,415,230
SMc03298
SMc03300: SMc03300 - transposase number 2 for insertion sequence ISRM26, at 3,415,306 to 3,415,650
SMc03300
SMc03301: SMc03301 - transposase number 1 for insertion sequence ISRM26, at 3,415,647 to 3,416,033
SMc03301
Position (kb)
3415
3416 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3414.327 kb on - strand, within SMc03298 at 3414.356 kb on + strand, within SMc03298 at 3414.357 kb on - strand, within SMc03298 at 3414.377 kb on + strand, within SMc03298 at 3414.378 kb on - strand, within SMc03298 at 3414.378 kb on - strand, within SMc03298 at 3414.483 kb on + strand, within SMc03298 at 3414.485 kb on + strand, within SMc03298 at 3414.486 kb on - strand, within SMc03298 at 3414.486 kb on - strand, within SMc03298 at 3414.572 kb on + strand, within SMc03298 at 3414.572 kb on + strand, within SMc03298 at 3414.573 kb on - strand, within SMc03298 at 3414.629 kb on + strand, within SMc03298 at 3414.629 kb on + strand, within SMc03298 at 3414.629 kb on + strand, within SMc03298 at 3414.629 kb on + strand, within SMc03298 at 3414.629 kb on + strand, within SMc03298 at 3414.629 kb on + strand, within SMc03298 at 3414.629 kb on + strand, within SMc03298 at 3414.630 kb on - strand, within SMc03298 at 3414.630 kb on - strand, within SMc03298 at 3414.630 kb on - strand, within SMc03298 at 3414.720 kb on - strand, within SMc03298 at 3414.741 kb on + strand, within SMc03298 at 3414.741 kb on + strand, within SMc03298 at 3414.764 kb on - strand, within SMc03298 at 3414.764 kb on - strand, within SMc03298 at 3415.241 kb on - strand at 3415.273 kb on - strand at 3415.381 kb on + strand, within SMc03300 at 3415.382 kb on - strand, within SMc03300 at 3415.402 kb on + strand, within SMc03300 at 3415.403 kb on - strand, within SMc03300 at 3415.417 kb on + strand, within SMc03300 at 3415.529 kb on + strand, within SMc03300 at 3415.530 kb on - strand, within SMc03300 at 3415.530 kb on - strand, within SMc03300 at 3415.625 kb on + strand at 3415.672 kb on - strand at 3415.672 kb on - strand at 3416.086 kb on + strand at 3416.086 kb on + strand at 3416.108 kb on + strand at 3416.109 kb on - strand at 3416.132 kb on - strand at 3416.152 kb on - strand at 3416.517 kb on + strand at 3416.571 kb on + strand at 3416.572 kb on - strand at 3416.586 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,414,327 - SMc03298 0.44 +0.1 3,414,356 + SMc03298 0.46 +0.1 3,414,357 - SMc03298 0.46 +0.0 3,414,377 + SMc03298 0.47 -0.5 3,414,378 - SMc03298 0.47 -0.4 3,414,378 - SMc03298 0.47 -0.4 3,414,483 + SMc03298 0.54 +0.5 3,414,485 + SMc03298 0.54 +0.0 3,414,486 - SMc03298 0.54 -0.7 3,414,486 - SMc03298 0.54 -0.0 3,414,572 + SMc03298 0.59 -0.1 3,414,572 + SMc03298 0.59 +0.0 3,414,573 - SMc03298 0.59 -0.5 3,414,629 + SMc03298 0.63 +0.3 3,414,629 + SMc03298 0.63 -1.2 3,414,629 + SMc03298 0.63 +0.3 3,414,629 + SMc03298 0.63 -1.9 3,414,629 + SMc03298 0.63 -1.3 3,414,629 + SMc03298 0.63 -0.7 3,414,629 + SMc03298 0.63 -0.0 3,414,630 - SMc03298 0.63 +0.2 3,414,630 - SMc03298 0.63 -0.1 3,414,630 - SMc03298 0.63 -0.5 3,414,720 - SMc03298 0.68 -0.4 3,414,741 + SMc03298 0.70 +0.2 3,414,741 + SMc03298 0.70 +0.4 3,414,764 - SMc03298 0.71 +1.2 3,414,764 - SMc03298 0.71 +0.2 3,415,241 - -0.3 3,415,273 - -0.0 3,415,381 + SMc03300 0.22 +0.7 3,415,382 - SMc03300 0.22 +1.2 3,415,402 + SMc03300 0.28 -0.6 3,415,403 - SMc03300 0.28 +1.8 3,415,417 + SMc03300 0.32 +0.1 3,415,529 + SMc03300 0.65 +0.1 3,415,530 - SMc03300 0.65 +0.8 3,415,530 - SMc03300 0.65 -0.6 3,415,625 + -0.2 3,415,672 - -2.3 3,415,672 - +0.3 3,416,086 + +1.0 3,416,086 + +0.6 3,416,108 + -1.1 3,416,109 - +0.1 3,416,132 - +0.6 3,416,152 - -0.9 3,416,517 + -0.0 3,416,571 + -0.7 3,416,572 - +0.2 3,416,586 + -0.8
Or see this region's nucleotide sequence