Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03243 and SMc03244 are separated by 156 nucleotides SMc03244 and SMc03245 are separated by 124 nucleotides
SMc03243: SMc03243 - alkaline phosphatase transmembrane protein, at 3,351,886 to 3,353,448
SMc03243
SMc03244: SMc03244 - hypothetical protein, at 3,353,605 to 3,353,826
SMc03244
SMc03245: SMc03245 - amidase, at 3,353,951 to 3,355,258
SMc03245
Position (kb)
3353
3354 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3352.623 kb on - strand, within SMc03243 at 3352.715 kb on + strand, within SMc03243 at 3352.770 kb on - strand, within SMc03243 at 3352.770 kb on - strand, within SMc03243 at 3352.882 kb on - strand, within SMc03243 at 3352.952 kb on + strand, within SMc03243 at 3352.952 kb on + strand, within SMc03243 at 3353.114 kb on + strand, within SMc03243 at 3353.114 kb on + strand, within SMc03243 at 3353.292 kb on + strand at 3353.311 kb on + strand at 3353.339 kb on + strand at 3353.351 kb on + strand at 3353.351 kb on + strand at 3353.351 kb on + strand at 3353.352 kb on - strand at 3353.606 kb on + strand at 3353.607 kb on - strand at 3353.622 kb on - strand at 3353.632 kb on + strand, within SMc03244 at 3353.632 kb on + strand, within SMc03244 at 3353.632 kb on + strand, within SMc03244 at 3353.633 kb on - strand, within SMc03244 at 3353.633 kb on - strand, within SMc03244 at 3353.633 kb on - strand, within SMc03244 at 3353.648 kb on + strand, within SMc03244 at 3353.648 kb on + strand, within SMc03244 at 3353.649 kb on - strand, within SMc03244 at 3353.684 kb on + strand, within SMc03244 at 3353.684 kb on + strand, within SMc03244 at 3353.715 kb on - strand, within SMc03244 at 3353.715 kb on - strand, within SMc03244 at 3353.715 kb on - strand, within SMc03244 at 3353.768 kb on + strand, within SMc03244 at 3353.768 kb on + strand, within SMc03244 at 3353.769 kb on - strand, within SMc03244 at 3353.769 kb on - strand, within SMc03244 at 3353.769 kb on - strand, within SMc03244 at 3353.769 kb on - strand, within SMc03244 at 3353.861 kb on + strand at 3353.866 kb on + strand at 3353.867 kb on - strand at 3353.867 kb on - strand at 3354.298 kb on + strand, within SMc03245 at 3354.504 kb on + strand, within SMc03245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,352,623 - SMc03243 0.47 -0.6 3,352,715 + SMc03243 0.53 +2.0 3,352,770 - SMc03243 0.57 -2.1 3,352,770 - SMc03243 0.57 +0.3 3,352,882 - SMc03243 0.64 -1.1 3,352,952 + SMc03243 0.68 -0.4 3,352,952 + SMc03243 0.68 +0.1 3,353,114 + SMc03243 0.79 -0.4 3,353,114 + SMc03243 0.79 -0.4 3,353,292 + +0.1 3,353,311 + +0.2 3,353,339 + +0.8 3,353,351 + +0.3 3,353,351 + -0.1 3,353,351 + -0.2 3,353,352 - +0.7 3,353,606 + -0.8 3,353,607 - +0.7 3,353,622 - +0.6 3,353,632 + SMc03244 0.12 +0.2 3,353,632 + SMc03244 0.12 -1.8 3,353,632 + SMc03244 0.12 +0.2 3,353,633 - SMc03244 0.13 -0.5 3,353,633 - SMc03244 0.13 +0.4 3,353,633 - SMc03244 0.13 -0.0 3,353,648 + SMc03244 0.19 -0.9 3,353,648 + SMc03244 0.19 -0.9 3,353,649 - SMc03244 0.20 -0.5 3,353,684 + SMc03244 0.36 +0.0 3,353,684 + SMc03244 0.36 -0.5 3,353,715 - SMc03244 0.50 -0.6 3,353,715 - SMc03244 0.50 -0.8 3,353,715 - SMc03244 0.50 -1.5 3,353,768 + SMc03244 0.73 -0.3 3,353,768 + SMc03244 0.73 +0.4 3,353,769 - SMc03244 0.74 -1.3 3,353,769 - SMc03244 0.74 -0.0 3,353,769 - SMc03244 0.74 +0.7 3,353,769 - SMc03244 0.74 -0.3 3,353,861 + -0.3 3,353,866 + +1.8 3,353,867 - +0.3 3,353,867 - -1.0 3,354,298 + SMc03245 0.27 -0.7 3,354,504 + SMc03245 0.42 +0.5
Or see this region's nucleotide sequence