Strain Fitness in Sinorhizobium meliloti 1021 around SMc03105

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03107 and SMc03106 are separated by 45 nucleotidesSMc03106 and SMc03105 are separated by 160 nucleotidesSMc03105 and SMc03104 are separated by 168 nucleotides SMc03107: SMc03107 - hypothetical protein, at 3,234,292 to 3,235,014 SMc03107 SMc03106: SMc03106 - hypothetical protein, at 3,235,060 to 3,235,785 SMc03106 SMc03105: SMc03105 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 3,235,946 to 3,237,121 SMc03105 SMc03104: SMc03104 - 5-aminolevulinate synthase, at 3,237,290 to 3,238,507 SMc03104 Position (kb) 3235 3236 3237 3238Strain fitness (log2 ratio) -2 -1 0 1at 3234.953 kb on - strandat 3235.025 kb on + strandat 3235.025 kb on + strandat 3235.061 kb on + strandat 3235.061 kb on + strandat 3235.149 kb on + strand, within SMc03106at 3235.149 kb on + strand, within SMc03106at 3235.150 kb on - strand, within SMc03106at 3235.150 kb on - strand, within SMc03106at 3235.150 kb on - strand, within SMc03106at 3235.150 kb on - strand, within SMc03106at 3235.151 kb on + strand, within SMc03106at 3235.259 kb on + strand, within SMc03106at 3235.259 kb on + strand, within SMc03106at 3235.260 kb on - strand, within SMc03106at 3235.293 kb on - strand, within SMc03106at 3235.374 kb on + strand, within SMc03106at 3235.374 kb on + strand, within SMc03106at 3235.375 kb on - strand, within SMc03106at 3235.381 kb on + strand, within SMc03106at 3235.382 kb on - strand, within SMc03106at 3235.382 kb on - strand, within SMc03106at 3235.382 kb on - strand, within SMc03106at 3235.501 kb on + strand, within SMc03106at 3235.601 kb on + strand, within SMc03106at 3235.602 kb on - strand, within SMc03106at 3235.663 kb on + strand, within SMc03106at 3235.664 kb on - strand, within SMc03106at 3235.835 kb on - strandat 3235.853 kb on - strandat 3235.863 kb on + strandat 3235.864 kb on - strandat 3235.899 kb on + strandat 3235.910 kb on + strandat 3235.932 kb on + strandat 3237.127 kb on + strandat 3237.127 kb on + strandat 3237.127 kb on + strandat 3237.127 kb on + strandat 3237.128 kb on - strandat 3237.128 kb on - strandat 3237.128 kb on - strandat 3237.222 kb on + strandat 3237.291 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
3,234,953 - -0.1
3,235,025 + +1.1
3,235,025 + -0.2
3,235,061 + -0.3
3,235,061 + +0.1
3,235,149 + SMc03106 0.12 +0.4
3,235,149 + SMc03106 0.12 +0.2
3,235,150 - SMc03106 0.12 +0.9
3,235,150 - SMc03106 0.12 +0.5
3,235,150 - SMc03106 0.12 -0.1
3,235,150 - SMc03106 0.12 -0.0
3,235,151 + SMc03106 0.13 -0.2
3,235,259 + SMc03106 0.27 +0.5
3,235,259 + SMc03106 0.27 +1.0
3,235,260 - SMc03106 0.28 +0.0
3,235,293 - SMc03106 0.32 -0.2
3,235,374 + SMc03106 0.43 -0.3
3,235,374 + SMc03106 0.43 +0.1
3,235,375 - SMc03106 0.43 -0.7
3,235,381 + SMc03106 0.44 +0.8
3,235,382 - SMc03106 0.44 +0.2
3,235,382 - SMc03106 0.44 -0.8
3,235,382 - SMc03106 0.44 -0.6
3,235,501 + SMc03106 0.61 -2.0
3,235,601 + SMc03106 0.75 -0.5
3,235,602 - SMc03106 0.75 +0.0
3,235,663 + SMc03106 0.83 +0.7
3,235,664 - SMc03106 0.83 -0.3
3,235,835 - +0.7
3,235,853 - +0.1
3,235,863 + -0.3
3,235,864 - -1.7
3,235,899 + +0.5
3,235,910 + -0.5
3,235,932 + -0.5
3,237,127 + -0.5
3,237,127 + -0.2
3,237,127 + +0.2
3,237,127 + -1.2
3,237,128 - -0.8
3,237,128 - -0.7
3,237,128 - -0.1
3,237,222 + -1.0
3,237,291 + +0.1

Or see this region's nucleotide sequence